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Exploiting the potential energy landscape to sample free energy


Type

Article

Change log

Authors

Ballard, AJ 
Martiniani, Stefano  ORCID logo  https://orcid.org/0000-0003-2028-2175
Stevenson, JD 
Somani, S 
Wales, DJ 

Abstract

jats:pWe review a number of recently developed strategies for enhanced sampling of complex systems based on knowledge of the potential energy landscape. We describe four approaches, replica exchange, Kirkwood sampling, superposition‐enhanced nested sampling, and basin sampling, and show how each of them can exploit information for low‐lying potential energy minima obtained using basin‐hopping global optimization. Characterizing these minima is generally much faster than equilibrium thermodynamic sampling, because large steps in configuration space between local minima can be used without concern for maintaining detailed balance. jats:italicWIREs Comput Mol Sci</jats:italic> 2015, 5:273–289. doi: 10.1002/wcms.1217</jats:p>jats:pThis article is categorized under: <jats:list list-type="explicit-label"> jats:list-itemjats:pStructure and Mechanism > Molecular Structures</jats:p></jats:list-item> jats:list-itemjats:pStructure and Mechanism > Computational Biochemistry and Biophysics</jats:p></jats:list-item> jats:list-itemjats:pStructure and Mechanism > Computational Materials Science</jats:p></jats:list-item> </jats:list></jats:p>

Description

Keywords

34 Chemical Sciences, 3406 Physical Chemistry

Journal Title

Wiley Interdisciplinary Reviews: Computational Molecular Science

Conference Name

Journal ISSN

1759-0876
1759-0884

Volume Title

5

Publisher

Blackwell Publishing Inc.
Sponsorship
European Research Council (267369)
The authors gratefully acknowledge financial support from the EPSRC and the ERC. S.M acknowledges financial support from the Gates Cambridge Scholarship.