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Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on.


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Authors

O'Boyle, Noel M 
Guha, Rajarshi 
Willighagen, Egon L 
Adams, Samuel E 
Alvarsson, Jonathan 

Abstract

BACKGROUND: The Blue Obelisk movement was established in 2005 as a response to the lack of Open Data, Open Standards and Open Source (ODOSOS) in chemistry. It aims to make it easier to carry out chemistry research by promoting interoperability between chemistry software, encouraging cooperation between Open Source developers, and developing community resources and Open Standards. RESULTS: This contribution looks back on the work carried out by the Blue Obelisk in the past 5 years and surveys progress and remaining challenges in the areas of Open Data, Open Standards, and Open Source in chemistry. CONCLUSIONS: We show that the Blue Obelisk has been very successful in bringing together researchers and developers with common interests in ODOSOS, leading to development of many useful resources freely available to the chemistry community.

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Keywords

OPEN-SOURCE SOFTWARE, DEVELOPMENT KIT CDK, SOURCE JAVA LIBRARY, DRUG DISCOVERY, WEB, CHEMINFORMATICS, BIOINFORMATICS, PREDICTION, FRAMEWORK, SERVICES

Journal Title

J Cheminform

Conference Name

Journal ISSN

1758-2946
1758-2946

Volume Title

Publisher

Springer Science and Business Media LLC
Sponsorship
NMOB is supported by a Health Research Board Career Development Fellowship (PD/2009/13). The OSRA project has been funded in whole or in part with federal funds from the National Cancer Institute, National Institutes of Health, under contract HHSN261200800001E. The content of this publication does not necessarily reflect the views of the policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organisations imply endorsement by the US Government.