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Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa.

Published version
Peer-reviewed

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Type

Article

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Authors

Sonnleitner, Elisabeth 
Wulf, Alexander 
Campagne, Sébastien 
Pei, Xue-Yuan 
Wolfinger, Michael T 

Abstract

In Pseudomonas aeruginosa the RNA chaperone Hfq and the catabolite repression control protein (Crc) act as post-transcriptional regulators during carbon catabolite repression (CCR). In this regard Crc is required for full-fledged Hfq-mediated translational repression of catabolic genes. RNAseq based transcriptome analyses revealed a significant overlap between the Crc and Hfq regulons, which in conjunction with genetic data supported a concerted action of both proteins. Biochemical and biophysical approaches further suggest that Crc and Hfq form an assembly in the presence of RNAs containing A-rich motifs, and that Crc interacts with both, Hfq and RNA. Through these interactions, Crc enhances the stability of Hfq/Crc/RNA complexes, which can explain its facilitating role in Hfq-mediated translational repression. Hence, these studies revealed for the first time insights into how an interacting protein can modulate Hfq function. Moreover, Crc is shown to interfere with binding of a regulatory RNA to Hfq, which bears implications for riboregulation. These results are discussed in terms of a working model, wherein Crc prioritizes the function of Hfq toward utilization of favored carbon sources.

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Keywords

Bacterial Proteins, Binding Sites, Bordetella pertussis, Carbohydrate Metabolism, Catabolite Repression, Escherichia coli, Gene Expression Regulation, Bacterial, Host Factor 1 Protein, Kinetics, Models, Molecular, Nucleotide Motifs, Protein Binding, Protein Biosynthesis, Protein Interaction Domains and Motifs, Protein Structure, Secondary, Pseudomonas aeruginosa, RNA, Bacterial, Regulon, Repressor Proteins, Transcriptome

Journal Title

Nucleic Acids Res

Conference Name

Journal ISSN

0305-1048
1362-4962

Volume Title

46

Publisher

Oxford University Press (OUP)
Sponsorship
Wellcome Trust (200873/Z/16/Z)