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Proposed methods for testing and selecting the ERCC external RNA controls.

Published version
Peer-reviewed

Type

Article

Change log

Authors

External RNA Controls Consortium 

Abstract

The External RNA Control Consortium (ERCC) is an ad-hoc group with approximately 70 members from private, public, and academic organizations. The group is developing a set of external RNA control transcripts that can be used to assess technical performance in gene expression assays. The ERCC is now initiating the Testing Phase of the project, during which candidate external RNA controls will be evaluated in both microarray and QRT-PCR gene expression platforms. This document describes the proposed experiments and informatics process that will be followed to test and qualify individual controls. The ERCC is distributing this description of the proposed testing process in an effort to gain consensus and to encourage feedback from the scientific community. On October 4-5, 2005, the ERCC met to further review the document, clarify ambiguities, and plan next steps. A summary of this meeting and changes to the test plan are provided as an appendix to this manuscript.

Description

Keywords

Bacteria, Computational Biology, DNA, DNA Primers, Dose-Response Relationship, Drug, Gene Expression Profiling, Genetic Techniques, Genomics, Humans, Models, Statistical, Nucleic Acid Hybridization, Oligonucleotide Array Sequence Analysis, Plasmids, RNA, RNA, Messenger, Reference Standards, Reverse Transcriptase Polymerase Chain Reaction

Journal Title

BMC Genomics

Conference Name

Journal ISSN

1471-2164
1471-2164

Volume Title

6

Publisher

Springer Science and Business Media LLC