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Designing disordered materials using DNA-coated colloids of bacteriophage fd and gold.


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Authors

Nathan, SH 
Unwin, RR 
Zupkauskas, M 
Joshi, D 

Abstract

DNA has emerged as an exciting binding agent for programmable colloidal self-assembly. Its popularity derives from its unique properties: it provides highly specific short-ranged interactions and at the same time it acts as a steric stabilizer against non-specific van der Waals and Coulomb interactions. Because complementary DNA strands are linked only via hydrogen bonds, DNA-mediated binding is thermally reversible: it provides an effective attraction that can be switched off by raising the temperature only by a few degrees. In this article we introduce a new binary system made of DNA-functionalized filamentous fd viruses of ∼880 nm length with an aspect ratio of ∼100, and 50 nm gold nanoparticles (gold NPs) coated with the complementary DNA strands. When quenching mixtures below the melt temperature Tm, at which the attraction is switched on, we observe aggregation. Conversely, above Tm the system melts into a homogenous particulate 'gas'. We present the aggregation behavior of three different gold NP to virus ratios and compare them to a gel made solely of gold NPs. In particular, we have investigated the aggregate structures as a function of cooling rate and determine how they evolve as function of time for given quench depths, employing fluorescence microscopy. Structural information was extracted in the form of an effective structure factor and chord length distributions. Rapid cooling rates lead to open aggregates, while slower controlled cooling rates closer to equilibrium DNA hybridization lead to more fine-stranded gels. Despite the different structures we find that for both cooling rates the quench into the two-phase region leads to initial spinodal decomposition, which becomes arrested. Surprisingly, although the fine-stranded gel is disordered, the overall structure and the corresponding length scale distributions in the system are remarkably reproducible. Such highly porous systems can be developed into new functional materials.

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Keywords

Bacteriophage M13, Cold Temperature, Colloids, DNA, Gold, Kinetics, Metal Nanoparticles, Nanotechnology, Nucleic Acid Hybridization, Transition Temperature

Journal Title

Faraday Discuss

Conference Name

Journal ISSN

1359-6640
1364-5498

Volume Title

186

Publisher

Royal Society of Chemistry (RSC)
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/G000298/1)
Biotechnology and Biological Sciences Research Council (BB/H002677/1)
This work would not have been possible without the financial support of various agencies: EE, CPG and ZR thank the Winton Program for the Physics of Sustainability. CPG and ZR acknowledge support from the EU ERC FP7 programme via an advanced fellowship for CPG. RU and SHN received support from the Engineering and Physical Sciences Research Council (EPSRC) for financial support. Work in the GPCS Lab is funded by the BBSRC, UK. DJ acknowledges the financial support from Udayan Care, NTCU and Schlumberger Foundation's FFTF program.