FT misc_feature 1..335 FT /note="core region, SSU rRNA and trnfM minicircle" FT /note="formely empty minicircle 4" FT /note="uncertain end of core region" FT /colour=13 FT tRNA 297..362 FT /gene="trnfMet" FT /note="putative fMet tRNA gene" FT /note="anticodon 24691-24693" FT stem_loop 746..791 FT /note="helix 18" FT stem_loop 793..802 FT /note="3' helix 3" FT stem_loop 813..815 FT /note="5' half helix 19" FT stem_loop 823..832 FT /note="5' half helix 20" FT stem_loop 1734..1743 FT /note="3' half helix 20" FT stem_loop 1748..1789 FT /note="helix 24" FT misc_RNA 1790..1799 FT /note="820 loop" FT /note="approx 60% identity to plastid sequences" FT stem_loop 1800..1805 FT /note="5' helix 25" FT stem_loop 1820..1827 FT /note="putative H26a" FT stem_loop 1837..1843 FT /note="3'helix 25" FT stem_loop 1845..1847 FT /note="3' half helix 19" FT stem_loop 1850..1876 FT /note="helix 27" FT primer_bind 1870..1890 FT /note="SSU1F" FT stem_loop 1885..1901 FT /note="5' half H28" FT stem_loop 1903..1907 FT /note="5' half helix 29" FT stem_loop 1908..1919 FT /note="5' half helix 30" FT stem_loop 1924..1940 FT /note="helix 31" FT stem_loop 1949..1955 FT /note="5' half helix 32" FT misc_RNA 1956..1999 FT /note="no structure like other SSU sequences (helices 33, FT 33a and 33b plus loops)" FT stem_loop 2000..2017 FT /note="5' half helix 34" FT stem_loop 2021..2026 FT /note="5' half helix 35" FT misc_RNA 2027..2039 FT /note="no structure like other SSU sequences in this FT region (helices 36-37)" FT stem_loop 2040..2045 FT /note="3' half helix 35" FT misc_RNA 2051..2084 FT /note="no structure like other SSU sequences in this FT region (helices 38-40)" FT /note="in the A. carterae minicircle there is a deletion FT of 5 nucleotides in this region (>ctttc<)" FT stem_loop 2090..2108 FT /note="3' half helix 34" FT stem_loop 2109..2117 FT /note="3' half helix32" FT stem_loop 2121..2133 FT /note="3' half helix 30" FT stem_loop 2137..2182 FT /note="helix 41, base of stem loop present, seems FT truncated" FT stem_loop 2186..2215 FT /note="helix 42" FT primer_bind complement(2212..2232) FT /note="SSU2R" FT stem_loop 2221..2225 FT /note="3' half helix 29" FT stem_loop 2231..2255 FT /note="helix 43" FT stem_loop 2262..2278 FT /note="3' half H28" FT misc_RNA 2291..2353 FT /note="region should contain helix 44, only the base 7 FT nucleotides appear conserved" FT stem_loop 2368..2391 FT /note="helix 45"