CLUSTER: 2 SIZE 39
Members of cluster
NM_002086, NM_006839, NM_003340, NM_006357, NM_013440, X62996, X62997, NM_014610, NM_021160, NM_003339, NM_016602, NM_002967, NM_001689, NM_006913, NM_000508, NM_002136, NM_032125, NM_032635, NM_006341, NM_007204, NM_001535, NM_007107, NM_022036, NM_006715, NM_003641, NM_080686, NM_013241, XM_046160, NM_005051, NM_022365, NM_006531, NM_001568, NM_005968, NM_004199, NM_013291, NM_004890, NM_003341, NM_014847, NM_002788

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:6508  proteolysis and peptidolysis  5/39
      GO:30163  protein catabolism  5/39
      GO:6464  protein modification  5/39
      GO:6511  ubiquitin-dependent protein catabolism  5/39
      GO:19941  modification-dependent protein catabolism  5/39
      GO:6139  nucleobase, nucleoside, nucleotide and nucleic acid metabolism  4/39
      GO:7166  cell surface receptor linked signal transduction  4/39
      GO:6512  ubiquitin cycle  4/39
      GO:42127  regulation of cell proliferation  2/39
      GO:6350  transcription  1/39
      GO:6351  transcription, DNA-dependent  1/39
   cellular_component
      GO:16021  integral to membrane  9/39
      GO:16020  membrane  9/39
      GO:267  cell fraction  6/39
      GO:5624  membrane fraction  4/39
      GO:5783  endoplasmic reticulum  3/39
      GO:5887  integral to plasma membrane  3/39
      GO:5792  microsome  2/39
      GO:42598  vesicular fraction  2/39
   molecular_process
      GO:3674  molecular_function  31/39
      GO:4871  signal transducer activity  6/39
      GO:16874  ligase activity  5/39
      GO:16879  ligase activity, forming carbon-nitrogen bonds  4/39
      GO:16881  acid-D-amino acid ligase activity  4/39
      GO:8639  small protein conjugating enzyme activity  4/39
      GO:4842  ubiquitin-protein ligase activity  4/39
      GO:4840  ubiquitin conjugating enzyme activity  4/39
      GO:4888  transmembrane receptor activity  3/39
      GO:4872  receptor activity  3/39
      GO:4930  G-protein coupled receptor activity  2/39
      GO:16798  hydrolase activity, acting on glycosyl bonds  2/39
      GO:42277  peptide binding  2/39
      GO:4553  hydrolase activity, hydrolyzing O-glycosyl compounds  2/39


CLUSTER: 15 SIZE 2
Members of cluster
NM_000142, NM_022107

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:9653  morphogenesis  1/2
      GO:7048  oncogenesis  1/2
      GO:7166  cell surface receptor linked signal transduction  1/2
      GO:7169  transmembrane receptor protein tyrosine kinase signaling pathway  1/2
      GO:8543  FGF receptor signaling pathway  1/2
      GO:7243  protein kinase cascade  1/2
      GO:9887  organogenesis  1/2
      GO:7167  enzyme linked receptor protein signaling pathway  1/2
      GO:1501  skeletal development  1/2
      GO:7259  JAK-STAT cascade  1/2
      GO:165  MAPKKK cascade  1/2
   cellular_component
      GO:5887  integral to plasma membrane  1/2
   molecular_process
      GO:4714  transmembrane receptor protein tyrosine kinase activity  1/2
      GO:4872  receptor activity  1/2
      GO:4888  transmembrane receptor activity  1/2
      GO:5007  fibroblast growth factor receptor activity  1/2
      GO:4713  protein-tyrosine kinase activity  1/2
      GO:19199  transmembrane receptor protein kinase activity  1/2


CLUSTER: 4 SIZE 15
Members of cluster
BC036575, NM_012138, NM_033515, NM_016224, NM_003755, NM_003249, NM_005792, U81002, NM_014183, NM_003072, NG_001158, NM_004945, NM_000146, NM_002582, NM_001023

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:6996  organelle organization and biogenesis  2/15
      GO:7010  cytoskeleton organization and biogenesis  2/15
      GO:7017  microtubule-based process  2/15
      GO:6875  metal ion homeostasis  1/15
      GO:46916  transition metal ion homeostasis  1/15
      GO:8104  protein localization  1/15
      GO:9451  RNA modification  1/15
      GO:30005  di-, tri-valent inorganic cation homeostasis  1/15
      GO:6916  anti-apoptosis  1/15
      GO:30705  cytoskeleton-dependent intracellular transport  1/15
      GO:7292  female gamete generation  1/15
      GO:7632  visual behavior  1/15
      GO:42592  homeostasis  1/15
      GO:30003  cation homeostasis  1/15
      GO:19725  cell homeostasis  1/15
      GO:7018  microtubule-based movement  1/15
      GO:6873  cell ion homeostasis  1/15
      GO:6879  iron ion homeostasis  1/15
   cellular_component
      GO:5868  cytoplasmic dynein complex  1/15
      GO:8043  ferritin complex  1/15
      GO:30286  dynein complex  1/15
   molecular_process
      GO:46914  transition metal ion binding  2/15
      GO:3774  motor activity  2/15
      GO:8237  metallopeptidase activity  1/15
      GO:8549  dynamine GTPase activity  1/15
      GO:5506  iron ion binding  1/15
      GO:8189  apoptosis inhibitor activity  1/15
      GO:3777  microtubule motor activity  1/15
      GO:4222  metalloendopeptidase activity  1/15


CLUSTER: 13 SIZE 2
Members of cluster
NM_130463, NM_001696

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:9206  purine ribonucleoside triphosphate biosynthesis  2/2
      GO:9150  purine ribonucleotide metabolism  2/2
      GO:6810  transport  2/2
      GO:9144  purine nucleoside triphosphate metabolism  2/2
      GO:6163  purine nucleotide metabolism  2/2
      GO:9201  ribonucleoside triphosphate biosynthesis  2/2
      GO:9142  nucleoside triphosphate biosynthesis  2/2
      GO:6812  cation transport  2/2
      GO:8151  cell growth and/or maintenance  2/2
      GO:6731  coenzymes and prosthetic group metabolism  2/2
      GO:6811  ion transport  2/2
      GO:6753  nucleoside phosphate metabolism  2/2
      GO:6732  coenzyme metabolism  2/2
      GO:9117  nucleotide metabolism  2/2
      GO:9058  biosynthesis  2/2
      GO:15992  proton transport  2/2
      GO:6754  ATP biosynthesis  2/2
      GO:9205  purine ribonucleoside triphosphate metabolism  2/2
      GO:9199  ribonucleoside triphosphate metabolism  2/2
      GO:9165  nucleotide biosynthesis  2/2
      GO:9259  ribonucleotide metabolism  2/2
      GO:6818  hydrogen transport  2/2
      GO:6752  group transfer coenzyme metabolism  2/2
      GO:9108  coenzyme biosynthesis  2/2
      GO:9145  purine nucleoside triphosphate biosynthesis  2/2
      GO:46034  ATP metabolism  2/2
      GO:15672  monovalent inorganic cation transport  2/2
      GO:9152  purine ribonucleotide biosynthesis  2/2
      GO:9141  nucleoside triphosphate metabolism  2/2
      GO:6164  purine nucleotide biosynthesis  2/2
      GO:9260  ribonucleotide biosynthesis  2/2
      GO:46138  coenzymes and prosthetic group biosynthesis  2/2
      GO:15985  energy coupled proton transport, down the electrochemical gradient  1/2
      GO:6119  oxidative phosphorylation  1/2
      GO:15986  ATP synthesis coupled proton transport  1/2
   cellular_component
      GO:45259  proton-transporting ATP synthase complex  1/2
      GO:16469  proton-transporting two-sector ATPase complex  1/2
      GO:5753  proton-transporting ATP synthase complex (sensu Eukarya)  1/2
      GO:45255  hydrogen-translocating F-type ATPase complex  1/2
      GO:19866  inner membrane  1/2
      GO:5740  mitochondrial membrane  1/2
      GO:5743  mitochondrial inner membrane  1/2
      GO:219  vacuolar hydrogen-transporting ATPase  1/2
      GO:5739  mitochondrion  1/2
   molecular_process
      GO:15077  monovalent inorganic cation transporter activity  2/2
      GO:16787  hydrolase activity  2/2
      GO:8324  cation transporter activity  2/2
      GO:15078  hydrogen ion transporter activity  2/2
      GO:8369  obsolete molecular function  2/2
      GO:15075  ion transporter activity  2/2
      GO:5215  transporter activity  2/2
      GO:3936  hydrogen-transporting two-sector ATPase activity  2/2
      GO:42625  ATPase activity, coupled to transmembrane movement of ions  1/2
      GO:8553  hydrogen-exporting ATPase activity, phosphorylative mechanism  1/2
      GO:15399  primary active transporter activity  1/2
      GO:15662  ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism  1/2
      GO:16820  hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances  1/2
      GO:15405  P-P-bond-hydrolysis-driven transporter activity  1/2
      GO:42626  ATPase activity, coupled to transmembrane movement of substances  1/2
      GO:5386  carrier activity  1/2
      GO:260  hydrogen-translocating V-type ATPase activity  1/2


CLUSTER: 9 SIZE 22
Members of cluster
BC001200, NM_003077, NM_015045, NM_031157, NM_017876, NM_032690, NM_012073, NM_003819, NM_022827, NM_003021, NM_032907, NM_004639, NM_080545, NM_005843, NM_018072, NM_001273, NM_005566, NM_019001, NM_000034, NM_013379, NM_015965, AI821928

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:8151  cell growth and/or maintenance  8/22
      GO:6810  transport  6/22
      GO:46907  intracellular transport  5/22
      GO:9056  catabolism  5/22
      GO:6886  intracellular protein transport  4/22
      GO:15031  protein transport  4/22
      GO:6997  nuclear organization and biogenesis  2/22
      GO:6357  regulation of transcription from Pol II promoter  2/22
      GO:6096  glycolysis  2/22
      GO:16568  chromatin modification  2/22
      GO:46365  monosaccharide catabolism  2/22
      GO:6006  glucose metabolism  2/22
      GO:6092  main pathways of carbohydrate metabolism  2/22
      GO:5996  monosaccharide metabolism  2/22
      GO:6605  protein targeting  2/22
      GO:16052  carbohydrate catabolism  2/22
      GO:19318  hexose metabolism  2/22
      GO:6007  glucose catabolism  2/22
      GO:6913  nucleocytoplasmic transport  2/22
      GO:15980  energy derivation by oxidation of organic compounds  2/22
      GO:6325  establishment and/or maintenance of chromatin architecture  2/22
      GO:46164  alcohol catabolism  2/22
      GO:6323  DNA packaging  2/22
      GO:19320  hexose catabolism  2/22
      GO:7001  chromosome organization and biogenesis (sensu Eukarya)  2/22
   cellular_component
      GO:5654  nucleoplasm  3/22
   molecular_process


CLUSTER: 6 SIZE 4
Members of cluster
NM_015456, NM_002904, XM_114002, NM_006311

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
   cellular_component
   molecular_process
      GO:3714  transcription co-repressor activity  1/4


CLUSTER: 11 SIZE 7
Members of cluster
NM_032454, NM_006231, NM_005850, NM_006115, NM_002696, NM_004955, M97191

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:6974  response to DNA damage stimulus  2/7
      GO:6950  response to stress  2/7
      GO:6259  DNA metabolism  2/7
      GO:6281  DNA repair  2/7
      GO:9719  response to endogenous stimulus  2/7
      GO:15858  nucleoside transport  1/7
      GO:6289  nucleotide-excision repair  1/7
      GO:6283  transcription-coupled nucleotide-excision repair  1/7
   cellular_component
      GO:30880  RNA polymerase complex  1/7
      GO:5665  DNA-directed RNA polymerase II, core complex  1/7
      GO:16591  DNA-directed RNA polymerase II, holoenzyme  1/7
   molecular_process
      GO:16740  transferase activity  3/7
      GO:16772  transferase activity, transferring phosphorus-containing groups  3/7
      GO:16779  nucleotidyltransferase activity  2/7
      GO:3887  DNA-directed DNA polymerase activity  1/7
      GO:3890  beta DNA polymerase activity  1/7
      GO:17125  deoxycytidyl transferase activity  1/7
      GO:5337  nucleoside transporter activity  1/7
      GO:16000  iota DNA polymerase activity  1/7
      GO:16449  lambda DNA polymerase activity  1/7
      GO:19984  sigma DNA polymerase activity  1/7
      GO:16451  nu DNA polymerase activity  1/7
      GO:3893  epsilon DNA polymerase activity  1/7
      GO:3891  delta DNA polymerase activity  1/7
      GO:3900  DNA-directed RNA polymerase I activity  1/7
      GO:3894  zeta DNA polymerase activity  1/7
      GO:16450  kappa DNA polymerase activity  1/7
      GO:19986  deoxycytidyl transferase activity, template dependent  1/7
      GO:3889  alpha DNA polymerase activity  1/7
      GO:3899  DNA-directed RNA polymerase activity  1/7
      GO:15999  eta DNA polymerase activity  1/7
      GO:3895  gamma DNA-directed DNA polymerase activity  1/7
      GO:16452  theta DNA polymerase activity  1/7
      GO:8222  tumor antigen  1/7
      GO:3901  DNA-directed RNA polymerase II activity  1/7
      GO:16448  mu DNA polymerase activity  1/7
      GO:3902  DNA-directed RNA polymerase III activity  1/7
      GO:15932  nucleobase, nucleoside, nucleotide and nucleic acid transporter activity  1/7
      GO:30145  manganese ion binding  1/7


CLUSTER: 1 SIZE 18
Members of cluster
NM_002586, NM_017740, NM_017775, NM_012424, AL579387, NM_022743, NM_017451, NM_006833, BC009263, NM_023010, XM_042108, NM_000968, NM_003640, NM_007234, NM_006337, NM_032251, NM_001487, NM_016553

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
   cellular_component
      GO:15630  microtubule cytoskeleton  3/18
      GO:5856  cytoskeleton  3/18
      GO:5871  kinesin complex  2/18
   molecular_process


CLUSTER: 3 SIZE 190
Members of cluster
NM_024710, NM_052850, NM_007080, NM_005066, NM_014329, NM_138363, NM_025072, NM_003095, NM_018403, NM_003325, NM_020158, NM_003443, NM_015453, NM_006360, NM_006277, NM_016082, NM_003757, NM_004539, NM_002415, NM_005957, NM_080632, NM_016042, NM_014287, U80752, BC040175, NM_012475, NM_003407, AW275464, NM_005348, NM_006384, Q9UM59, NM_014953, NM_003146, NM_004475, NM_014462, AV753896, NM_014463, NM_003958, NM_022742, NM_006716, NM_014285, XM_072118, NM_000986, NM_017491, AK090737, NM_000754, NM_004159, NM_007006, NM_003929, NM_017727, NM_002688, NM_002180, NM_016046, NM_006916, NM_005716, NM_019037, NM_012322, NM_032520, NM_006033, BC045623, NM_152624, NM_031471, AI685517, NM_002797, NM_006666, NM_014484, NM_001028, NM_153477, NM_002685, AK021996, NM_019082, NM_021177, NM_031208, NM_004628, NM_001212, NM_016199, NM_170715, NM_001539, NM_012321, AW975586, NM_005197, NM_017567, NM_014828, NM_014062, NM_004451, AB037811, XM_371417, NM_152640, NM_017547, NM_007375, NM_004688, NM_144693, NM_003687, NM_017958, XM_113678, NM_016200, NM_000909, AB046824, FLJ40491, NM_005510, NM_004175, NM_014487, BF210065, NM_018103, NM_014615, NM_016121, BQ668976, NM_006938, AL137461, NM_032498, NM_001970, NM_080599, NM_004597, AK074364, NM_015356, NM_012255, XM_302813, NM_024536, NM_032999, NM_020679, NM_032317, NM_003094, XM_054951, NM_003017, AK027187, NM_018677, BF686613, XM_085017, NM_003935, NM_006929, BM451300, AK096810, NM_002654, NM_032558, NM_032822, AW974116, NM_015508, NM_015360, BG403593, NM_002212, NM_016404, NM_001288, NM_005483, NM_052965, NM_002911, NM_003091, AI620703, NM_022818, NM_001402, NM_019009, NM_032881, AK074101, NM_016328, BQ277691, NM_002793, NM_033536, NM_024569, PDCD2, NM_015681, NM_014664, NM_002631, NM_006755, NM_012203, NM_016091, NM_001018, NM_006066, NM_024741, AK091455, NM_021729, NM_018161, BQ069192, AB037839, AJ420488, NM_006230, NM_058219, AI580336, NM_013446, NM_014064, BU663601, NM_003802, NM_002689, BC045575, NM_170743, NM_015004, NM_031370, NM_007273, NM_012414, AB067488, XM_033181, BC008502

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:16070  RNA metabolism  32/190
      GO:6396  RNA processing  31/190
      GO:8371  obsolete biological process  26/190
      GO:19538  protein metabolism  23/190
      GO:6397  mRNA processing  20/190
      GO:6371  mRNA splicing  18/190
      GO:8380  RNA splicing  17/190
      GO:375  RNA splicing, via transesterification reactions  17/190
      GO:377  RNA splicing, via transesterification reactions with bulged adenosine as nucleophile  17/190
      GO:398  nuclear mRNA splicing, via spliceosome  17/190
      GO:42254  ribosome biogenesis and assembly  9/190
      GO:7046  ribosome biogenesis  9/190
      GO:6364  rRNA processing  9/190
      GO:6360  transcription from Pol I promoter  9/190
      GO:6810  transport  6/190
      GO:46907  intracellular transport  3/190
      GO:6464  protein modification  3/190
      GO:16310  phosphorylation  1/190
      GO:6796  phosphate metabolism  1/190
      GO:6793  phosphorus metabolism  1/190
      GO:6468  protein amino acid phosphorylation  1/190
   cellular_component
      GO:5730  nucleolus  19/190
      GO:5732  small nucleolar ribonucleoprotein complex  14/190
      GO:30532  small nuclear ribonucleoprotein complex  7/190
      GO:16020  membrane  6/190
      GO:5886  plasma membrane  3/190
      GO:16021  integral to membrane  3/190
      GO:5654  nucleoplasm  1/190
      GO:5887  integral to plasma membrane  1/190
   molecular_process
      GO:3824  catalytic activity  41/190
      GO:8248  pre-mRNA splicing factor activity  15/190
      GO:3734  small nuclear ribonucleoprotein  8/190
      GO:16740  transferase activity  7/190
      GO:16301  kinase activity  4/190
      GO:16772  transferase activity, transferring phosphorus-containing groups  3/190
      GO:4674  protein serine/threonine kinase activity  2/190
      GO:4672  protein kinase activity  2/190
      GO:16773  phosphotransferase activity, alcohol group as acceptor  2/190
      GO:46914  transition metal ion binding  1/190


CLUSTER: 14 SIZE 4
Members of cluster
BM310104, NM_023011, NM_002093, NM_006435

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:6402  mRNA catabolism  1/4
      GO:6073  glucan metabolism  1/4
      GO:5976  polysaccharide metabolism  1/4
      GO:184  mRNA catabolism, nonsense-mediated  1/4
      GO:6112  energy reserve metabolism  1/4
      GO:5977  glycogen metabolism  1/4
   cellular_component
   molecular_process
      GO:4690  cyclic-nucleotide dependent protein kinase activity  1/4
      GO:4691  Camp-dependent protein kinase activity  1/4
      GO:5478  intracellular transporter activity  1/4
      GO:5487  nucleocytoplasmic transporter activity  1/4
      GO:4696  glycogen synthase kinase 3 activity  1/4


CLUSTER: 7 SIZE 8
Members of cluster
NM_001320, NM_001895, NM_002350, NM_006349, XM_012804, NM_000969, NM_003925, NM_001896

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:19538  protein metabolism  4/8
      GO:7154  cell communication  4/8
      GO:7165  signal transduction  4/8
      GO:6793  phosphorus metabolism  3/8
      GO:16310  phosphorylation  3/8
      GO:6468  protein amino acid phosphorylation  3/8
      GO:6464  protein modification  3/8
      GO:6796  phosphate metabolism  3/8
      GO:7286  spermatid development  1/8
      GO:30154  cell differentiation  1/8
      GO:7283  spermatogenesis  1/8
      GO:48232  male gamete generation  1/8
      GO:6284  base-excision repair  1/8
   cellular_component
      GO:5941  unlocalized  1/8
      GO:5956  protein kinase CK2 complex  1/8
   molecular_process
      GO:3824  catalytic activity  6/8
      GO:16773  phosphotransferase activity, alcohol group as acceptor  5/8
      GO:4672  protein kinase activity  5/8
      GO:16740  transferase activity  5/8
      GO:16301  kinase activity  5/8
      GO:16772  transferase activity, transferring phosphorus-containing groups  5/8
      GO:4674  protein serine/threonine kinase activity  4/8
      GO:4682  protein kinase CK2 activity  3/8
      GO:17076  purine nucleotide binding  3/8
      GO:4680  casein kinase activity  3/8
      GO:5524  ATP binding  3/8
      GO:166  nucleotide binding  3/8
      GO:30554  adenyl nucleotide binding  3/8
      GO:4690  cyclic-nucleotide dependent protein kinase activity  2/8
      GO:30234  enzyme regulator activity  2/8
      GO:4691  cAMP-dependent protein kinase activity  2/8
      GO:19207  kinase regulator activity  2/8
      GO:19887  protein kinase regulator activity  2/8
      GO:4693  cyclin-dependent protein kinase activity  1/8
      GO:4519  endonuclease activity  1/8
      GO:4520  endodeoxyribonuclease activity  1/8
      GO:3696  satellite DNA binding  1/8
      GO:4536  deoxyribonuclease activity  1/8
      GO:8605  protein kinase CK2, intrinsic regulator activity  1/8
      GO:16538  cyclin-dependent protein kinase, intrinsic regulator activity  1/8
      GO:19843  rRNA binding  1/8
      GO:8097  5S rRNA binding  1/8
      GO:4716  receptor signaling protein tyrosine kinase activity  1/8


CLUSTER: 5 SIZE 12
Members of cluster
NM_007222, NM_138394, NM_004671, NM_001019, NM_032364, NM_022740, NM_005033, NM_004640, NM_005782, NM_003211, XM_040002, NM_005804

Significant GO terms for this cluster (cluster proteins with this annotation/cluster size)
   biological_process
      GO:6406  mRNA-nucleus export  1/12
   cellular_component
      GO:5622  intracellular  9/12
      GO:5623  cell  9/12
      GO:5634  nucleus  8/12
   molecular_process
      GO:3676  nucleic acid binding  7/12
      GO:3677  DNA binding  4/12
      GO:30528  transcription regulator activity  3/12
      GO:700  mismatch base pair DNA N-glycosylase activity  1/12
      GO:8263  pyrimidine-specific mismatch base pair DNA N-glycosylase activity  1/12
      GO:16799  hydrolase activity, hydrolyzing N-glycosyl compounds  1/12
      GO:19104  DNA N-glycosylase activity  1/12