Additional data file 4. This text file contains the set of genes that are over-expressed 2-fold or more in the NMD mutant compared to wild-type. For each gene the length of the 3’UTR (if greater than average), occurrence of upstream ORF’s and the presence of introns that are expressed in the mutant are listed.
WBGene00020090	288		R119.5.exon5|
WBGene00018848			
WBGene00020040			
WBGene00011550			
WBGene00009054		uORF	
WBGene00000631			
WBGene00000431	306		
WBGene00009261		uORF	
WBGene00022633		uORF	
WBGene00004706	222		
WBGene00002225		uORF	
WBGene00008665			
WBGene00017885			
WBGene00020087			
WBGene00015313			
WBGene00012960			
WBGene00013893			
WBGene00020840			
WBGene00004875	453	uORF	
WBGene00009665			
WBGene00022160			
WBGene00013702		uORF	Y106G6D.6.exon2|Y106G6D.6.exon9|Y106G6D.6.exon13|
WBGene00009360			
WBGene00021677			
WBGene00008766			F13G3.6.exon2|F13G3.6.exon4|
WBGene00017098	406		E02D9.1b.1.exon3|E02D9.1a.exon2|
WBGene00010771			
WBGene00011062			R06C7.2.exon2|
WBGene00006789	602		
WBGene00012136	443		
WBGene00020403		uORF	
WBGene00012231			
WBGene00013959	267		
WBGene00022517		uORF	
WBGene00006061			
WBGene00008292			
WBGene00007255			
WBGene00003934			
WBGene00008877			
WBGene00006709			
WBGene00000814			
WBGene00003836			
WBGene00010569	891	uORF	K04G2.11.exon2|
WBGene00012237			
WBGene00001725	260		
WBGene00014183			
WBGene00020348			
WBGene00011156			
WBGene00001704			
WBGene00009455			
WBGene00020039			
WBGene00020346	250	uORF	T08B2.5a.exon5|
WBGene00008130			
WBGene00009499	220	uORF	
WBGene00002189		uORF	ZK909.2j.exon7|
WBGene00000801			
WBGene00008477			
WBGene00009314		uORF	
WBGene00022457			Y110A7A.7.exon3|
WBGene00002226	241	uORF	
WBGene00011059			R06C1.4.exon1|R06C1.4.exon2|
WBGene00021213	256	uORF	
WBGene00021647			
WBGene00000634			
WBGene00008543		uORF	
WBGene00009123		uORF	F25H2.12a.exon1|
WBGene00021763			
WBGene00019429			
WBGene00011548			
WBGene00021464			
WBGene00015235	238		B0511.9a.exon3|B0511.9b.exon3|
WBGene00044404	224		
WBGene00018510			
WBGene00019598			
WBGene00020192			
WBGene00018009	366	uORF	
WBGene00016942		uORF	
WBGene00002042			
WBGene00009964			
WBGene00016907	294		
WBGene00004879	598	uORF	
WBGene00010877			
WBGene00022763			
WBGene00002063		uORF	
WBGene00022868		uORF	ZK1240.3.exon4|ZK1240.3.exon2|
WBGene00019208			
WBGene00018807			
WBGene00020149			
WBGene00009355		uORF	
WBGene00003045		uORF	
WBGene00019306		uORF	
WBGene00008863			
WBGene00000653			
WBGene00014046			
WBGene00019311	619	uORF	
WBGene00021052			W06A11.1.exon3|
WBGene00017462			
WBGene00004394			
WBGene00006583	237		
WBGene00014259		uORF	
WBGene00011663			T09F3.4.exon2|
WBGene00001208	573	uORF	
WBGene00009656			
WBGene00004398			
WBGene00009511			F37H8.2.exon2|F37H8.2.exon1|F37H8.2.exon3|
WBGene00019122	527	uORF	
WBGene00008455			
WBGene00018298			
WBGene00018805			
WBGene00015816			C16A11.3.exon2|
WBGene00013255			
WBGene00004264	327		
WBGene00011335	506		
WBGene00018448	663	uORF	
WBGene00018101		uORF	
WBGene00011997			
WBGene00004215	458		
WBGene00022867			ZK1240.2.exon5|ZK1240.2.exon2|
WBGene00020028		uORF	
WBGene00017451		uORF	
WBGene00007918	274	uORF	
WBGene00015207			
WBGene00006947		uORF	
WBGene00022569	784	uORF	
WBGene00018661			F52C6.4.exon4|
WBGene00015896			
WBGene00017711		uORF	
WBGene00016161			
WBGene00017456			
WBGene00013216			
WBGene00013248			
WBGene00044394			
WBGene00001777			
WBGene00004704			D2089.1b.1.exon3|
WBGene00007412	460	uORF	
WBGene00013092			
WBGene00013171			
WBGene00018874			F55C12.7.1.exon6|
WBGene00021595			
WBGene00000659			
WBGene00007996			
WBGene00008929		uORF	
WBGene00016354		uORF	
WBGene00013246			
WBGene00013252			Y57A10A.7.exon7|
WBGene00015887	361		
WBGene00015818			C16A11.5.exon6|
WBGene00008496			
WBGene00018435			
WBGene00022765	284		
WBGene00020164	291		T02G5.4.exon4|T02G5.4.exon2|
WBGene00008560			
WBGene00004698	781		
WBGene00010989	231		R03D7.2.exon2|R03D7.2.exon1|
WBGene00016121			
WBGene00015841	270		
WBGene00010267			
WBGene00022857	370		
WBGene00015894	238	uORF	
WBGene00004702	285		T28D9.2b.exon2|
WBGene00010550	569	uORF	
WBGene00013014			
WBGene00003044	276	uORF	
WBGene00011999		uORF	
WBGene00012588		uORF	Y38E10A.10.exon2|
WBGene00004120			
WBGene00013249			
WBGene00021104	478		
WBGene00002096	296	uORF	
WBGene00010264		uORF	
WBGene00021076			W07E6.5.exon1|
WBGene00015408			
WBGene00004447			F10E7.7.1.exon2|
WBGene00018195			
WBGene00016962			
WBGene00013141			
WBGene00016825			
WBGene00018803		uORF	
WBGene00008862			
WBGene00001760			
WBGene00016341			
WBGene00016072			
WBGene00016713		uORF	
WBGene00013007			
WBGene00003480	229		
WBGene00015819			
WBGene00020799		uORF	T25D10.1.exon5|
WBGene00000252			
WBGene00013247			
WBGene00015208			
WBGene00020577		uORF	
WBGene00019088			
WBGene00015608	275		C08F1.4a.exon2|C08F1.4a.exon1|C08F1.4a.exon8|
WBGene00016113		uORF	
WBGene00003699		uORF	
WBGene00009205			
WBGene00022854			
WBGene00016339			
WBGene00000652			
WBGene00010897	227		
WBGene00000657			
WBGene00015853			C16C8.16.exon5|
WBGene00013173		uORF	Y53F4B.27a.exon7|
WBGene00000778			
WBGene00006514			
WBGene00003547			
WBGene00003388			
WBGene00016417	356		C34F11.8.exon3|
WBGene00012005	334	uORF	T24H10.7c.exon1|
WBGene00004699	439		W02B12.2.exon2|
WBGene00020451			
WBGene00021249			
WBGene00015640		uORF	
WBGene00001242			
WBGene00013560	788		Y75B8A.29.1.exon4|
WBGene00006591	336		
WBGene00010309	269		
WBGene00021909			
WBGene00011278			R74.2.exon3|
WBGene00011112			
WBGene00011869	353		
WBGene00010308			
WBGene00016167			C27F2.5.1.exon11|
WBGene00022179			Y71H2AM.14a.exon11|
WBGene00012651			
WBGene00019811		uORF	
WBGene00007136			
WBGene00019328			
WBGene00006959	398		
WBGene00005011			
WBGene00013559			
WBGene00018827			
WBGene00019303			
WBGene00010545			
WBGene00010037			F54C8.4.exon1|
WBGene00018723			F53A3.7.exon1|
WBGene00018133		uORF	
WBGene00013741			
WBGene00003055		uORF	F48E8.1a.exon5|
WBGene00015268			
WBGene00016224			
WBGene00021040			
WBGene00019329			
WBGene00017356			
WBGene00006971	431	uORF	
WBGene00017158	260		F01F1.1a.exon4|
WBGene00013241			
WBGene00016445			
WBGene00021759			
WBGene00004798			
WBGene00002230			
WBGene00022579			ZC262.2b.exon3|ZC262.2b.exon2|
WBGene00011811			T16H12.1.exon4|T16H12.1.exon1|
WBGene00016411			
WBGene00015335			
WBGene00019261		uORF	
WBGene00013841			
WBGene00019184			
WBGene00009595	247	uORF	
WBGene00010362			
WBGene00008655			
WBGene00015591			
WBGene00010476			
WBGene00019500			
WBGene00016218		uORF	C29F9.3a.1.exon4|
WBGene00001457			
WBGene00008119		uORF	C46F11.4.exon2|
WBGene00007579			
WBGene00022791		uORF	
WBGene00006359	443	uORF	
WBGene00015643		uORF	
WBGene00021443			
WBGene00020105			R148.7.exon6|
WBGene00021314			
WBGene00022335			
WBGene00013734	958		
WBGene00021531	466		
WBGene00013227		uORF	
WBGene00022338	305		
WBGene00019327		uORF	K02F3.4.1.exon4|K02F3.4.1.exon2|K02F3.4.1.exon1|K02F3.4.1.exon3|
WBGene00019878			
WBGene00021755			
WBGene00021812			
WBGene00018721			
WBGene00009957		uORF	F53B2.8.exon2|
WBGene00001584			
WBGene00044465			K03H6.6.exon4|
WBGene00008195			C49C3.5.exon1|
WBGene00023520	293		
WBGene00013654		uORF	
WBGene00004278			
WBGene00006051			
WBGene00000093		uORF	
WBGene00008150		uORF	C47E12.6a.exon12|
WBGene00013462		uORF	
WBGene00019898			
WBGene00020295			T07A9.1.exon1|
WBGene00017991			F32E10.3.exon10|
WBGene00007264			
WBGene00003604			Y73F8A.21.exon12|
WBGene00006968		uORF	
WBGene00003995			
WBGene00012889			Y45F10D.10.exon3|
WBGene00019535			
WBGene00010122			
WBGene00006779	726	uORF	K11E8.1a.1.exon13|K11E8.1a.1.exon14|K11E8.1c.1.exon9|
WBGene00016380		uORF	
WBGene00011599		uORF	
WBGene00021873		uORF	
WBGene00010657	221		
WBGene00015304	214	uORF	
WBGene00007869			
WBGene00006957			
WBGene00021201			Y17G9B.4.exon1|
WBGene00017929		uORF	
WBGene00010658			K08D8.4a.exon5|K08D8.4a.exon8|
WBGene00019724			
WBGene00016432			C35B1.2.exon13|C35B1.2.exon12|C35B1.2.exon11|
WBGene00001204		uORF	
WBGene00013385		uORF	
WBGene00019752			M03D4.6.exon2|
WBGene00020981		uORF	W03D2.6.exon5|W03D2.6.exon2|W03D2.6.exon3|W03D2.6.exon4|
WBGene00022074	447		
WBGene00015050			B0218.6.exon6|
WBGene00000685			
WBGene00018638		uORF	
WBGene00019176			
WBGene00013639	462		Y105C5A.15.exon8|
WBGene00004360	489	uORF	
WBGene00044493			
WBGene00021924			
WBGene00008512			
WBGene00008554			
WBGene00007823			
WBGene00023486	319		
WBGene00022234	969		Y73B6BL.5a.1.exon7|Y73B6BL.5a.1.exon2|Y73B6BL.5a.1.exon6|
WBGene00021205			Y17G9B.8.exon3|Y17G9B.8.exon2|
WBGene00018928		uORF	
WBGene00012774			
WBGene00009587	643		
WBGene00019750			
WBGene00004051	233		
WBGene00013647			
WBGene00022677	482	uORF	
WBGene00011131		uORF	
WBGene00007106			
WBGene00001113	221		
WBGene00001079			
WBGene00001338			T07A9.2.exon2|
WBGene00012769	427	uORF	
WBGene00019463		uORF	
WBGene00012540			Y37A1B.7.exon3|Y37A1B.7.exon2|
WBGene00019509		uORF	
WBGene00013325			
WBGene00000705			
WBGene00021082	255		
WBGene00003677			
WBGene00020434			T11F8.2.exon2|
WBGene00044290			
WBGene00012418			Y7A9C.1.exon2|
WBGene00006769	1030		
WBGene00021921	279		
WBGene00015052			
WBGene00004703	332		
WBGene00016402			
WBGene00016670			
WBGene00003694	323	uORF	
WBGene00017074			
WBGene00001460	298		
WBGene00000703			
WBGene00019825			
WBGene00000674	299		
WBGene00019021			
WBGene00017577		uORF	
WBGene00004881			Y73B6BL.18.1.exon2|
WBGene00007460			C08F11.13.1.exon5|C08F11.13.1.exon4|
WBGene00007732		uORF	
WBGene00013789			
WBGene00002188			ZC416.4.exon2|
WBGene00007454	343	uORF	
WBGene00011594			T07G12.3.exon7|
WBGene00043064		uORF	
WBGene00010891			
WBGene00018256		uORF	
WBGene00044463		uORF	
WBGene00015932			
WBGene00019789		uORF	
WBGene00021894			
WBGene00008712		uORF	
WBGene00004029			
WBGene00004410			Y62E10A.1.1.exon2|
WBGene00003844			
WBGene00008270			
WBGene00003540			
WBGene00008851			
WBGene00022015			
WBGene00013963	612		
WBGene00017678			
WBGene00014112			
WBGene00011668			
WBGene00017800			
WBGene00001719			C26F1.5.exon3|
WBGene00013763			Y113G7B.14.exon2|
WBGene00013348			
WBGene00000373			F08F3.7.exon1|
WBGene00010295			F59A1.9.exon3|
WBGene00017789	474	uORF	
WBGene00010790			
WBGene00012813			
WBGene00022627			
WBGene00015460			
WBGene00010209			
WBGene00011617			
WBGene00000717			
WBGene00019466	872	uORF	
WBGene00016061	376	uORF	
WBGene00022847		uORF	
WBGene00019672			
WBGene00017503			
WBGene00018975			
WBGene00020951			
WBGene00001479	285		
WBGene00015359			C02G6.1.exon3|
WBGene00015876			
WBGene00011591			
WBGene00020616			
WBGene00004882	307		
WBGene00013611			
WBGene00006954			
WBGene00019650			
WBGene00015433		uORF	
WBGene00015441	288		
WBGene00012566			Y37H2A.6.exon5|
WBGene00009221			
WBGene00017093	238		E02C12.8a.exon4|E02C12.8a.exon3|
WBGene00015400			C03G6.15.exon1|
WBGene00004152			T19B10.4a.exon3|T19B10.4a.exon2|
WBGene00004817			
WBGene00008127			
WBGene00008339			C55A6.10.exon7|
WBGene00007237			
WBGene00012293	467		
WBGene00007124			B0250.7.exon2|
WBGene00010468			
WBGene00022626			
WBGene00044209			Y32F6A.6.exon2|
WBGene00000718			
WBGene00009433		uORF	F35E12.9a.exon3|F35E12.9b.exon2|F35E12.9a.exon4|F35E12.9b.exon3|
WBGene00044212			
WBGene00017957			F31F4.1.exon4|
WBGene00010286		uORF	F58H1.3a.exon6|F58H1.3a.exon3|
WBGene00012567			
WBGene00020615			T20D4.9.exon3|
WBGene00003691			H12C20.6a.exon1|H12C20.6a.exon4|H12C20.6a.exon6|H12C20.6a.exon2|H12C20.6a.exon5|
WBGene00012819	259		
WBGene00012404			Y6G8.2.exon2|Y6G8.2.exon3|
WBGene00003769		uORF	
WBGene00004230			T21H3.2.exon6|
WBGene00011209		uORF	R10E8.3.exon2|R10E8.3.exon4|R10E8.3.exon5|R10E8.3.exon3|R10E8.3.exon1|
WBGene00003057		uORF	
WBGene00011393			
WBGene00011210			R10E8.4.exon5|R10E8.4.exon4|
WBGene00008101			
WBGene00007283		uORF	
WBGene00008997			
WBGene00017537			
WBGene00012568			
WBGene00017964	616	uORF	
WBGene00019095		uORF	F59A7.8.exon3|F59A7.8.exon5|
WBGene00017680	328	uORF	
WBGene00012533			Y36E3A.1.exon1|
WBGene00013947			ZK228.4b.exon1|
WBGene00007932			C34D1.5.exon2|
WBGene00017565			F18E3.7a.exon1|F18E3.7a.exon3|
WBGene00006442			F58G11.5.1.exon2|
WBGene00013612			
WBGene00019236			
WBGene00000876			
WBGene00008944			
WBGene00007362			C06B3.3.exon6|
WBGene00019757	626		
WBGene00011540			
WBGene00007785			C27H6.3.exon4|
WBGene00017608			
WBGene00019448	294		
WBGene00021977			
WBGene00001428			
WBGene00020622			
WBGene00018540		uORF	
WBGene00021448	222		
WBGene00044188			
WBGene00012693			
WBGene00010212			
WBGene00019357	639		
WBGene00005018	234		
WBGene00012777			
WBGene00004064		uORF	
WBGene00000250			
WBGene00008254			C51E3.9.exon5|
WBGene00006652	348		
WBGene00007534		uORF	
WBGene00012569			Y37H2A.9.exon4|
WBGene00011397	466	uORF	
WBGene00004809			F44G3.6.exon2|
WBGene00003834			C15H11.3.exon6|
WBGene00012245	222	uORF	W04D2.6b.exon1|
WBGene00010285			
WBGene00001721			
WBGene00006057	563	uORF	F47B8.11.exon1|
WBGene00017082		uORF	
WBGene00003522			
WBGene00019115			
WBGene00021739	261		
WBGene00013365			
WBGene00015046			
WBGene00010082	236	uORF	
WBGene00044586			
WBGene00010294			F59A1.8.exon2|
WBGene00021167			Y5H2B.5.exon2|
WBGene00002118			
WBGene00019467			
WBGene00019808			
WBGene00044024			
WBGene00015434			C04E12.4.1.exon4|C04E12.4.1.exon1|C04E12.4.1.exon13|
WBGene00008897			F16H6.7.exon3|F16H6.7.exon2|
WBGene00007121			
WBGene00020273			
WBGene00016496	306		
WBGene00011194	256	uORF	
WBGene00016229			
WBGene00015440			
WBGene00020862			
WBGene00011305			
WBGene00013366			
WBGene00020869			
WBGene00021743			
WBGene00044515			K10C9.9.exon2|
WBGene00009769			
WBGene00017501			
WBGene00001691		uORF	
WBGene00012144			T28H10.3.exon5|
WBGene00010470			K01D12.11.exon4|K01D12.11.exon5|
WBGene00003474			
WBGene00011207	254	uORF	
WBGene00018694			
WBGene00005832			C25F9.1.exon3|
WBGene00012295			
WBGene00016985			
WBGene00022212	215		
WBGene00009634			
WBGene00020194			
WBGene00001461			
WBGene00022204			
WBGene00016033	729		
WBGene00008605	313		
WBGene00012225			
WBGene00017375			
WBGene00019958			
WBGene00004033	309		
WBGene00008356			
WBGene00017380	227		
WBGene00006927			
WBGene00006588	272		C14F5.3b.exon1|C14F5.3b.exon11|C14F5.3a.exon9|C14F5.3c.1.exon7|
WBGene00014072			
WBGene00011079			R07B1.7.exon4|
WBGene00008601	616	uORF	
WBGene00022614	262	uORF	ZC449.4.exon1|
WBGene00020570			
WBGene00016896			C53B7.7.exon8|C53B7.7.exon7|C53B7.7.exon2|C53B7.7.exon3|
WBGene00011984			
WBGene00020809			
WBGene00008260			C52G5.2.exon5|
WBGene00001516	553	uORF	
WBGene00004987			
WBGene00006462			
WBGene00002280	422		
WBGene00017463			
WBGene00017513	471		
WBGene00011077			
WBGene00020571			
WBGene00018577		uORF	
WBGene00017625	320		
WBGene00003104	229		
WBGene00020734	453		
WBGene00020427			
WBGene00001617		uORF	
WBGene00007343			
WBGene00017377	535		
WBGene00019250	260	uORF	
WBGene00016617	233		
WBGene00003124	551		
WBGene00016131	754	uORF	C26B9.1a.exon6|
WBGene00000749			
WBGene00001335	420		
WBGene00004831		uORF	
WBGene00003981			F18G5.2.exon5|F18G5.2.exon10|F18G5.2.exon4|
WBGene00020338			
WBGene00011075			
WBGene00022224			
WBGene00008350			
WBGene00020736			
WBGene00019358			
WBGene00015781			C14F11.6.exon2|
WBGene00000748			
WBGene00019609	213		
WBGene00002056	536		M6.1b.exon18|
WBGene00016009	226		
WBGene00018487			
WBGene00016133		uORF	
WBGene00020847			
WBGene00011078			
WBGene00008517			
WBGene00017307			
WBGene00006321	480		
WBGene00006369	414	uORF	
WBGene00008358			
WBGene00018307			F41G4.1.exon1|
WBGene00022745	605	uORF	
WBGene00007128			
WBGene00017108	323	uORF	E03E2.1.1.exon5|
WBGene00022415		uORF	
WBGene00004127			
WBGene00000745		uORF	
WBGene00044149			
WBGene00010505			
WBGene00001451			
WBGene00008215			
WBGene00016270			
WBGene00019868			
WBGene00007266	244	uORF	
WBGene00001462	257		
WBGene00022612			
Total positive =317