up_me49_only.xlsx - genes that were upregulated in ME49-infected samples (MOI 3) compared to Uninfected cells at either 24hpi or 43hpi (and not upregulated in RH-infected samples) were put through KEGG pathway analysis using STRING. The pathways and genes contributing to those pathways are in this file. 

up_rh_only.xlsx - genes that were upregulated in RH-infected samples (MOI 1.2) compared to Uninfected cells at either 24hpi or 43hpi (and not upregulated in RH-infected samples) were put through KEGG pathway analysis using STRING. The pathways and genes contributing to those pathways are in this file. 

me49_over_time.xlsx - the top 100 (according to adjusted p-value) genes that were DE between ME49-infected 24h and Uninfected 0h and between ME49-infected 43h and ME49-infected 24h were put through KEGG pathway analysis using STRING. The pathways and genes contributing to those pathways are in this file.

rh_over_time.xlsx - the top 100 (according to adjusted p-value) genes that were DE between RH-infected 24h and Uninfected 0h and between RH-infected 43h and RH-infected 24h were put through KEGG pathway analysis using STRING. The pathways and genes contributing to those pathways are in this file.