Description of data supporting publication: "A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control"

Data folders:

>>wt
This folder contains timecourses of the 6 flowers used in the analyses in the paper.
FM1 (the one used as the representative example), FM2, FM3, FM4, FM5, and FM6.

>>wt/FM1
Taking FM1 as an example, the folder for each flower contains:

>>wt/FM1/tiffs
Raw timecourse images where the name of each file is the timepoint at which it was acquired (e.g. 0h.tif).

>>wt/FM1/segmentation_tiffs
Segmented timecourse images where the name of each file contains the timepoint at which it was acquired (e.g. 0h_segmented.tif).

>>wt/FM1/tracking_data
Lineage data for the timecourse mapping the cells at consecutive timepoints.
The name of each file contains the timepoints that it connects, e.g. 0hrs_to_10hrs.txt.
The mapping is given for each cell on a separate line as mother cell id: daughter cell id 1, daughter cell id 2, ...
(e.g. 2: 3, 4, 5 if cell 2 at some timepoint becomes cells 3, 4, 5 at the next timepoint).

>>wt/FM1/geneExpression
This sub-folder exists only for FM1 and contains temporal gene expression data for the flower cells in the Morphonet
data format (see: https://morphonet.org/help_format)



>>leafy
This folder contains timecourses of the lfy mutant flowers used in the lfy mutant analysis following the same
structure as the wt flowers above.



>> in_situ_GFP_expression_patterns
in-situ data used for building the gene expression patterns for FM1 (see above, wt/FM1/geneExpression)



Relevant code repository:
https://gitlab.com/slcu/teamHJ/publications/refahi_etal_2020/


Contact information:
Jan Traas
jan.traas@ens-lyon.fr

Henrik Jonsson 
henrik.jonsson@slcu.cam.ac.uk

Yassin Refahi 
yassin.refahi@inrae.fr

Argyris Zardilis 
argyris.zardilis@slcu.cam.ac.uk