This archive contains two files associated with the manuscript "Parallel adaptation of rabbit populations to myxoma virus"

1 - rabbit_dataset.vcf is a vcf of the entire dataset generated with program GATK (version 3.5) (original working name: rabbit_HM_EX_SNP_MAPQ40_Merge_Rescale_VarFilt1_GenFilt2_Biallelic_MinCov5.vcf)
2 - rabbit_dataset_allelecount.txt is an allele count of all SNPs for each population where the header corresponds to the following:
	CHR:	Chromosome
	POS:	Position
	REF:	Reference Allele
	ALT:	Alternative Allele
	MAF:	Minor Allele Frequency
	pvalue_HWE_H:	HWE p-value in historical Samples
	pvalue_HWE_M:	HWE p-value in modern Samples
	H_AU_CALL:	Number of genotypes called in Australia (Historical)
	M_AU_CALL:	Number of genotypes called in Australia (Modern)
	H_UK_CALL:	Number of genotypes called in  UK (Historical)
	M_UK_CALL:	Number of genotypes called in Modern UK
	H_FR_CALL:	Number of genotypes called in Historical France
	M_FR_CALL:	Number of genotypes called in Modern France
	H_AU_REF:	Number of REF alleles in Historical Australia (Historical)
	M_AU_REF:	Number of REF alleles in Modern Australia
	H_UK_REF:	Number of REF alleles in Historical UK
	M_UK_REF:	Number of REF alleles in Modern UK
	H_FR_REF:	Number of REF alleles in Historical France
	M_FR_REF:	Number of REF alleles in Modern France
	H_AU_ALT:	Number of ALT alleles in Historical Australia
	M_AU_ALT:	Number of ALT alleles in Modern Australia
	H_UK_ALT:	Number of ALT alleles in Historical UK
	M_UK_ALT:	Number of ALT alleles in Modern UK
	H_FR_ALT:	Number of ALT alleles in Historical France
	M_FR_ALT:	Number of ALT alleles in Modern France