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Specific protein detection using designed DNA carriers and nanopores.


Type

Article

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Authors

Bell, Nicholas AW 
Keyser, Ulrich F 

Abstract

Nanopores are a versatile technique for the detection and characterization of single molecules in solution. An ongoing challenge in the field is to find methods to selectively detect specific biomolecules. In this work we describe a new technique for sensing specific proteins using unmodified solid-state nanopores. We engineered a double strand of DNA by hybridizing nearly two hundred oligonucleotides to a linearized version of the m13mp18 virus genome. This engineered double strand, which we call a DNA carrier, allows positioning of protein binding sites at nanometer accurate intervals along its contour via DNA conjugation chemistry. We measure the ionic current signal of translocating DNA carriers as a function of the number of binding sites and show detection down to the single protein level. Furthermore, we use DNA carriers to develop an assay for identifying a single protein species within a protein mixture.

Description

Keywords

Animals, Binding Sites, Cattle, DNA, Drug Design, Nanopores, Nanotechnology, Nucleic Acid Hybridization, Proteins

Journal Title

J Am Chem Soc

Conference Name

Journal ISSN

0002-7863
1520-5126

Volume Title

137

Publisher

American Chemical Society (ACS)
Sponsorship
European Research Council (261101)
We thank Vivek Thacker and Nadanai Laohakunakorn for critical reading of this manuscript. N.A.W.B. was supported by an EPSRC Doctoral Prize Award. U.F.K. acknowledges support by an ERC starting grant, PassMembrane 261101.