Repository logo
 

Structural and dynamic insights into the energetics of activation loop rearrangement in FGFR1 kinase.


Type

Article

Change log

Authors

Klein, Tobias 
Vajpai, Navratna 
Phillips, Jonathan J  ORCID logo  https://orcid.org/0000-0002-5361-9582
Davies, Gareth 
Holdgate, Geoffrey A 

Abstract

Protein tyrosine kinases differ widely in their propensity to undergo rearrangements of the N-terminal Asp-Phe-Gly (DFG) motif of the activation loop, with some, including FGFR1 kinase, appearing refractory to this so-called 'DFG flip'. Recent inhibitor-bound structures have unexpectedly revealed FGFR1 for the first time in a 'DFG-out' state. Here we use conformationally selective inhibitors as chemical probes for interrogation of the structural and dynamic features that appear to govern the DFG flip in FGFR1. Our detailed structural and biophysical insights identify contributions from altered dynamics in distal elements, including the αH helix, towards the outstanding stability of the DFG-out complex with the inhibitor ponatinib. We conclude that the αC-β4 loop and 'molecular brake' regions together impose a high energy barrier for this conformational rearrangement, and that this may have significance for maintaining autoinhibition in the non-phosphorylated basal state of FGFR1.

Description

Keywords

Escherichia coli, Humans, Imidazoles, Kinetics, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Structure, Pyridazines, Receptor, Fibroblast Growth Factor, Type 1

Journal Title

Nat Commun

Conference Name

Journal ISSN

2041-1723
2041-1723

Volume Title

6

Publisher

Springer Science and Business Media LLC
Sponsorship
This work was funded as part of the AstraZeneca Internal Postdoctoral program. All authors with the exception of G.S.T. are employees (and stockholders) of AstraZeneca UK Ltd or MedImmune LLC, or were at the time that this study was conducted.