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A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing.


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Authors

Untiveros, Milton 
Olspert, Allan 
Artola, Katrin 
Firth, Andrew E 

Abstract

The single-stranded, positive-sense RNA genome of viruses in the genus Potyvirus encodes a large polyprotein that is cleaved to yield 10 mature proteins. The first three cleavage products are P1, HCpro and P3. An additional short open reading frame (ORF), called pipo, overlaps the P3 region of the polyprotein ORF. Four related potyviruses infecting sweet potato (Ipomoea batatas) are predicted to contain a third ORF, called pispo, which overlaps the 3' third of the P1 region. Recently, pipo has been shown to be expressed via polymerase slippage at a conserved GA6 sequence. Here, we show that pispo is also expressed via polymerase slippage at a GA6 sequence, with higher slippage efficiency (∼5%) than at the pipo site (∼1%). Transient expression of recombinant P1 or the 'transframe' product, P1N-PISPO, in Nicotiana benthamiana suppressed local RNA silencing (RNAi), but only P1N-PISPO inhibited short-distance movement of the silencing signal. These results reveal that polymerase slippage in potyviruses is not limited to pipo expression, but can be co-opted for the evolution and expression of further novel gene products.

Description

Keywords

RNA silencing suppression, RNA virus, frameshift, gene expression, overlapping gene, transcriptional slippage, Amino Acid Motifs, Amino Acid Sequence, Base Sequence, DNA-Directed RNA Polymerases, Genes, Suppressor, Genetic Vectors, Genome, Viral, Genomics, High-Throughput Nucleotide Sequencing, Ipomoea batatas, Mutation, Open Reading Frames, Peptides, Phenotype, Polymorphism, Single Nucleotide, Potyvirus, RNA Interference, RNA, Viral, Structure-Activity Relationship, Suppression, Genetic, Transcription, Genetic, Viral Proteins

Journal Title

Mol Plant Pathol

Conference Name

Journal ISSN

1464-6722
1364-3703

Volume Title

Publisher

Wiley
Sponsorship
Wellcome Trust (106207/Z/14/Z)
Biotechnology and Biological Sciences Research Council (BB/J015652/1)
Biotechnology and Biological Sciences Research Council (BB/J007072/1)
Wellcome Trust (088789/Z/09/Z)
Segundo Fuentes is acknowledged for technical assistance. Work in the AEF lab was funded by grants from the Wellcome Trust (088789 and 106207) and the Biotechnology and Biological Sciences Research Council (BBSRC) (BB/J007072/1 and BB/J015652/1). Work at the University of Helsinki was funded by the Academy of Finland (1134335 and 1276136) and work at CIP was funded by the CGIAR consortium research program for roots, tubers and bananas.