The genus Saxifraga contain many species that form a calcified crust on the leaf surface, originating from pore-containing pits that form part of the leaf hydathode structure. The detailed morphology and development of the hydathodes are not well understood for this genus. We present a study of the fine structure and developmental stages of hydathode pit formation along the leaf margin of the alpine plant Saxifraga cochlearis and cryo-fracture to reveal the internal hydathode structure. Raman- and stereo-microscopy have been used to deduce the composition and distribution of the crust. We find the pits occur as a developmental series along the leaf where conserved and oriented divisions within leaf lobes appear to give rise to the early pit. Both pit formation and lobe maturation are linked. As the pits deepen, hydathode pores differentiate to thick-walled, cone shaped structures and, together with the ovoid epithem tissue extrude liquid resulting in deposits of calcite that fill the pits and spill on to the leaf margin. The epithem does not possess the typical organisation or cell morphologies that have been reported for hydathodes from other plants, lacking lobed cells and having an indistinctive sheath-like cell layer.