ComplexViewer: visualization of curated macromolecular complexes.
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Authors
Combe, Colin W
Sivade, Marine Dumousseau
Hermjakob, Henning
Heimbach, Joshua
Meldal, Birgit HM
Orchard, Sandra
Rappsilber, Juri
Publication Date
2017-11-15Journal Title
Bioinformatics
ISSN
1367-4803
Publisher
Oxford University Press (OUP)
Volume
33
Issue
22
Pages
3673-3675
Language
eng
Type
Article
Physical Medium
Print
Metadata
Show full item recordCitation
Combe, C. W., Sivade, M. D., Hermjakob, H., Heimbach, J., Meldal, B. H., Micklem, G., Orchard, S., & et al. (2017). ComplexViewer: visualization of curated macromolecular complexes.. Bioinformatics, 33 (22), 3673-3675. https://doi.org/10.1093/bioinformatics/btx497
Abstract
SUMMARY: Proteins frequently function as parts of complexes, assemblages of multiple proteins and other biomolecules, yet network visualizations usually only show proteins as parts of binary interactions. ComplexViewer visualizes interactions with more than two participants and thereby avoids the need to first expand these into multiple binary interactions. Furthermore, if binding regions between molecules are known then these can be displayed in the context of the larger complex. AVAILABILITY AND IMPLEMENTATION: freely available under Apache version 2 license; EMBL-EBI Complex Portal: http://www.ebi.ac.uk/complexportal; Source code: https://github.com/MICommunity/ComplexViewer; Package: https://www.npmjs.com/package/complexviewer; http://biojs.io/d/complexviewer. Language: JavaScript; Web technology: Scalable Vector Graphics; Libraries: D3.js. CONTACT: colin.combe@ed.ac.uk or juri.rappsilber@ed.ac.uk.
Keywords
Macromolecular Substances, Computational Biology, Protein Binding, Models, Biological, Software, Protein Interaction Domains and Motifs, Protein Interaction Maps
Sponsorship
BBSRC (via European Molecular Biology Laboratory (EMBL)) (CID:1861-MIDAS)
Identifiers
External DOI: https://doi.org/10.1093/bioinformatics/btx497
This record's URL: https://www.repository.cam.ac.uk/handle/1810/280504
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