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dc.contributor.authorCombe, Colin W
dc.contributor.authorSivade, Marine Dumousseau
dc.contributor.authorHermjakob, Henning
dc.contributor.authorHeimbach, Joshua
dc.contributor.authorMeldal, Birgit HM
dc.contributor.authorMicklem, Gos
dc.contributor.authorOrchard, Sandra
dc.contributor.authorRappsilber, Juri
dc.date.accessioned2018-09-20T12:05:33Z
dc.date.available2018-09-20T12:05:33Z
dc.date.issued2017-11-15
dc.identifier.issn1367-4803
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/280504
dc.description.abstractSUMMARY: Proteins frequently function as parts of complexes, assemblages of multiple proteins and other biomolecules, yet network visualizations usually only show proteins as parts of binary interactions. ComplexViewer visualizes interactions with more than two participants and thereby avoids the need to first expand these into multiple binary interactions. Furthermore, if binding regions between molecules are known then these can be displayed in the context of the larger complex. AVAILABILITY AND IMPLEMENTATION: freely available under Apache version 2 license; EMBL-EBI Complex Portal: http://www.ebi.ac.uk/complexportal; Source code: https://github.com/MICommunity/ComplexViewer; Package: https://www.npmjs.com/package/complexviewer; http://biojs.io/d/complexviewer. Language: JavaScript; Web technology: Scalable Vector Graphics; Libraries: D3.js. CONTACT: colin.combe@ed.ac.uk or juri.rappsilber@ed.ac.uk.
dc.format.mediumPrint
dc.languageeng
dc.publisherOxford University Press (OUP)
dc.rightsAttribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectMacromolecular Substances
dc.subjectComputational Biology
dc.subjectProtein Binding
dc.subjectModels, Biological
dc.subjectSoftware
dc.subjectProtein Interaction Domains and Motifs
dc.subjectProtein Interaction Maps
dc.titleComplexViewer: visualization of curated macromolecular complexes.
dc.typeArticle
prism.endingPage3675
prism.issueIdentifier22
prism.publicationDate2017
prism.publicationNameBioinformatics
prism.startingPage3673
prism.volume33
dc.identifier.doi10.17863/CAM.27874
dcterms.dateAccepted2017-08-01
rioxxterms.versionofrecord10.1093/bioinformatics/btx497
rioxxterms.licenseref.urihttp://www.rioxx.net/licenses/all-rights-reserved
rioxxterms.licenseref.startdate2017-11
dc.contributor.orcidMicklem, Gos [0000-0002-6883-6168]
dc.identifier.eissn1367-4811
rioxxterms.typeJournal Article/Review
pubs.funder-project-idBBSRC (via European Molecular Biology Laboratory (EMBL)) (CID:1861-MIDAS)
cam.issuedOnline2017-08-03


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Attribution 4.0 International
Except where otherwise noted, this item's licence is described as Attribution 4.0 International