Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
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Authors
Raden, Martin
Ali, Syed M
Alkhnbashi, Omer S
Busch, Anke
Costa, Fabrizio
Davis, Jason A
Eggenhofer, Florian
Gelhausen, Rick
Georg, Jens
Heyne, Steffen
Hiller, Michael
Kleinkauf, Robert
Lott, Steffen C
Mohamed, Mostafa M
Mattheis, Alexander
Miladi, Milad
Richter, Andreas S
Will, Sebastian
Wolff, Joachim
Wright, Patrick R
Backofen, Rolf
Publication Date
2018-07-02Journal Title
Nucleic Acids Res
ISSN
0305-1048
Publisher
Oxford University Press (OUP)
Volume
46
Issue
W1
Pages
W25-W29
Language
eng
Type
Article
Physical Medium
Print
Metadata
Show full item recordCitation
Raden, M., Ali, S. M., Alkhnbashi, O. S., Busch, A., Costa, F., Davis, J. A., Eggenhofer, F., et al. (2018). Freiburg RNA tools: a central online resource for RNA-focused research and teaching.. Nucleic Acids Res, 46 (W1), W25-W29. https://doi.org/10.1093/nar/gky329
Abstract
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.
Keywords
RNA, Sequence Alignment, Sequence Analysis, RNA, Base Sequence, Nucleic Acid Conformation, Structure-Activity Relationship, Algorithms, Internet, Software
Identifiers
External DOI: https://doi.org/10.1093/nar/gky329
This record's URL: https://www.repository.cam.ac.uk/handle/1810/284676
Rights
Attribution-NonCommercial 4.0 International
Licence URL: https://creativecommons.org/licenses/by-nc/4.0/
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