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Synthetic versus Analytic Approaches to Protein and DNA Structure Determination

Published version
Peer-reviewed

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Authors

Bolinska, AM 

Abstract

The structures of protein and DNA were discovered primarily by means of synthesizing component-level information about bond types, lengths, and angles, rather than analyzing X-ray diffraction photographs of these molecules. In this paper, I consider the synthetic and analytic approaches to exemplify alternative heuristics for approaching mid-twentieth-century macromolecular structure determination. I argue that the former was, all else being equal, likeliest to generate the correct structure in the shortest period of time. I begin by characterizing problem solving in these cases as proceeding via the elimination of candidate structures through the successive application of component-level information and interpretations of X-ray diffraction photographs, each of which serves as a kind of constraint on structure. Then, I argue that although each kind of constraint enables the elimination of a considerable proportion of candidate structures, component-level constraints are significantly more likely to do so correctly. Thus, considering them before X-ray diffraction photographs is a better heuristic than one that reverses this order. Because the synthetic approach that resulted in the determination of the protein and DNA structures exemplifies such a heuristic, its use can help account for these discoveries.

Description

Keywords

Heuristics, X-ray diffraction crystallography, Evidence, Protein structure, DNA structure, Alpha helix, Information, Discovery

Journal Title

Biology and Philosophy

Conference Name

Journal ISSN

1572-8404
1572-8404

Volume Title

33

Publisher

Springer Nature