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Escherichia coli can survive stress by noisy growth modulation.

Published version
Peer-reviewed

Type

Article

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Authors

Schwall, Christian 
Villava, Casandra 
Griffith, Douglas A 

Abstract

Gene expression can be noisy, as can the growth of single cells. Such cell-to-cell variation has been implicated in survival strategies for bacterial populations. However, it remains unclear how single cells couple gene expression with growth to implement these strategies. Here, we show how noisy expression of a key stress-response regulator, RpoS, allows E. coli to modulate its growth dynamics to survive future adverse environments. We reveal a dynamic positive feedback loop between RpoS and growth rate that produces multi-generation RpoS pulses. We do so experimentally using single-cell, time-lapse microscopy and microfluidics and theoretically with a stochastic model. Next, we demonstrate that E. coli prepares for sudden stress by entering prolonged periods of slow growth mediated by RpoS. This dynamic phenotype is captured by the RpoS-growth feedback model. Our synthesis of noisy gene expression, growth, and survival paves the way for further exploration of functional phenotypic variability.

Description

Keywords

Bacterial Proteins, Escherichia coli, Escherichia coli Proteins, Gene Expression Regulation, Bacterial, Microfluidics, Sigma Factor, Time-Lapse Imaging

Journal Title

Nat Commun

Conference Name

Journal ISSN

2041-1723
2041-1723

Volume Title

9

Publisher

Springer Science and Business Media LLC
Sponsorship
European Research Council (338060)
The Royal Society (uf130313)
Gatsby Charitable Foundation (unknown)
Human Frontier Science Program (HFSP) (CDA-/2012)