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Compressed sensing: Reconstruction of non-uniformly sampled multidimensional NMR data

Accepted version
Peer-reviewed

Type

Conference Object

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Authors

Abstract

© 2018 Wiley Periodicals, Inc. Nuclear magnetic resonance (NMR) spectroscopy is widely used across the physical, chemical, and biological sciences. A core component of NMR studies is multidimensional experiments, which enable correlation of properties from one or more NMR-active nuclei. In high-resolution biomolecular NMR, common nuclei are1H,15N, and13C, and triple resonance experiments using these three nuclei form the backbone of NMR structural studies. In other fields, a range of other nuclei may be used. Multidimensional NMR experiments provide unparalleled information content, but this comes at the price of long experiment times required to achieve the necessary resolution and sensitivity. Non-uniform sampling (NUS) techniques to reduce the required data sampling have existed for many decades. Recently, such techniques have received heightened interest due to the development of compressed sensing (CS) methods for reconstructing spectra from such NUS datasets. When applied jointly, these methods provide a powerful approach to dramatically improve the resolution of spectra per time unit and under suitable conditions can also lead to signal-to-noise ratio improvements. In this review, we explore the basis of NUS approaches, the fundamental features of NUS reconstruction using CS and applications based on CS approaches including the benefits of expanding the repertoire of biomolecular NMR experiments into higher dimensions. We discuss some of the recent algorithms and software packages and provide practical tips for recording and processing NUS data by CS.

Description

Keywords

compressed sensing, multidimensional nuclear magnetic resonance, non-uniform sampling, signal processing, sparse sampling

Journal Title

Concepts in Magnetic Resonance Part A: Bridging Education and Research

Conference Name

Advances in alternative sampling and processing

Journal ISSN

1546-6086
1552-5023

Volume Title

46A

Publisher

Wiley
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/K01983X/1)