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Identification of RBPMS as a mammalian smooth muscle master splicing regulator via proximity of its gene with super-enhancers.

Published version
Peer-reviewed

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Authors

Nakagaki-Silva, Erick E  ORCID logo  https://orcid.org/0000-0002-6878-4409
Gooding, Clare 
Llorian, Miriam 
Jacob, Aishwarya G 
Richards, Frederick 

Abstract

Alternative splicing (AS) programs are primarily controlled by regulatory RNA-binding proteins (RBPs). It has been proposed that a small number of master splicing regulators might control cell-specific splicing networks and that these RBPs could be identified by proximity of their genes to transcriptional super-enhancers. Using this approach we identified RBPMS as a critical splicing regulator in differentiated vascular smooth muscle cells (SMCs). RBPMS is highly down-regulated during phenotypic switching of SMCs from a contractile to a motile and proliferative phenotype and is responsible for 20% of the AS changes during this transition. RBPMS directly regulates AS of numerous components of the actin cytoskeleton and focal adhesion machineries whose activity is critical for SMC function in both phenotypes. RBPMS also regulates splicing of other splicing, post-transcriptional and transcription regulators including the key SMC transcription factor Myocardin, thereby matching many of the criteria of a master regulator of AS in SMCs.

Description

Keywords

RNA binding protein, alternative splicing, chromosomes, gene expression, rat, smooth muscle, super-enhancer, Animals, Cell Line, Enhancer Elements, Genetic, Gene Expression Profiling, Gene Expression Regulation, HEK293 Cells, Humans, Muscle, Smooth, Vascular, Myocytes, Smooth Muscle, Nuclear Proteins, RNA Interference, RNA Splicing, RNA-Binding Proteins, Rats, Trans-Activators

Journal Title

Elife

Conference Name

Journal ISSN

2050-084X
2050-084X

Volume Title

8

Publisher

eLife Sciences Publications, Ltd
Sponsorship
Wellcome Trust (092900/Z/10/Z)
British Heart Foundation (None)
British Heart Foundation (PG/16/28/32123)
Wellcome Trust (209368/Z/17/Z)
Medical Research Council (MC_PC_12009)
British Heart Foundation (FS/18/46/33663)
Funder: British Heart Foundation (BHF) Funder ID: 10.13039/501100000274 Funder: British Heart Foundation (BHF) Funder ID: 10.13039/501100000274 Funder: Wellcome Funder ID: 10.13039/100010269 Funder: Wellcome Funder ID: 10.13039/100010269
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