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GC content shapes mRNA storage and decay in human cells

Published version
Peer-reviewed

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Authors

Courel, Maïté 
Bossevain, Clémentine 
Foretek, Dominika 
Vidal Cruchez, Olivia 

Abstract

mRNA translation and decay appear often intimately linked although the rules of this interplay are poorly understood. In this study, we combined our recent P-body transcriptome with transcriptomes obtained following silencing of broadly acting mRNA decay and repression factors, and with available CLIP and related data. This revealed the central role of GC content in mRNA fate, in terms of P-body localization, mRNA translation and mRNA stability: P-bodies contain mostly AU-rich mRNAs, which have a particular codon usage associated with a low protein yield; AU-rich and GC-rich transcripts tend to follow distinct decay pathways; and the targets of sequence-specific RBPs and miRNAs are also biased in terms of GC content. Altogether, these results suggest an integrated view of post-transcriptional control in human cells where most translation regulation is dedicated to inefficiently translated AU-rich mRNAs, whereas control at the level of 5’ decay applies to optimally translated GC-rich mRNAs.

Description

Funder: Canceropôle PACA; FundRef: http://dx.doi.org/10.13039/501100006331


Funder: Biotechnology and Biological Sciences Research Council; FundRef: http://dx.doi.org/10.13039/501100000268


Funder: Isaac Newton Trust; FundRef: http://dx.doi.org/10.13039/501100004815


Funder: Fondation Philippe Wiener - Maurice Anspach; FundRef: http://dx.doi.org/10.13039/501100003138

Keywords

Research Article, Chromosomes and Gene Expression, P-bodies, post-transcriptional regulation, mRNA storage, mRNA decay, codon usage, GC content, Human

Journal Title

Conference Name

Journal ISSN

2050-084X

Volume Title

Publisher

Sponsorship
Association pour la Recherche sur le Cancer (Subvention Fixe)
Agence Nationale de la Recherche (ANR-14-CE09-0013-01)
European Research Council (DARK consolidator grant)
Agence Nationale de la Recherche (ANR-11-LABX-0028-01)