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Common activation mechanism of class A GPCRs.

Published version
Peer-reviewed

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Authors

Wu, Meng 
Guo, Yu 
Guo, Wanjing 

Abstract

Class A G-protein-coupled receptors (GPCRs) influence virtually every aspect of human physiology. Understanding receptor activation mechanism is critical for discovering novel therapeutics since about one-third of all marketed drugs target members of this family. GPCR activation is an allosteric process that couples agonist binding to G-protein recruitment, with the hallmark outward movement of transmembrane helix 6 (TM6). However, what leads to TM6 movement and the key residue level changes of this movement remain less well understood. Here, we report a framework to quantify conformational changes. By analyzing the conformational changes in 234 structures from 45 class A GPCRs, we discovered a common GPCR activation pathway comprising of 34 residue pairs and 35 residues. The pathway unifies previous findings into a common activation mechanism and strings together the scattered key motifs such as CWxP, DRY, Na+ pocket, NPxxY and PIF, thereby directly linking the bottom of ligand-binding pocket with G-protein coupling region. Site-directed mutagenesis experiments support this proposition and reveal that rational mutations of residues in this pathway can be used to obtain receptors that are constitutively active or inactive. The common activation pathway provides the mechanistic interpretation of constitutively activating, inactivating and disease mutations. As a module responsible for activation, the common pathway allows for decoupling of the evolution of the ligand binding site and G-protein-binding region. Such an architecture might have facilitated GPCRs to emerge as a highly successful family of proteins for signal transduction in nature.

Description

Funder: Young Talent Program of Shanghai

Keywords

GPCR, activation mechanism, allostery, computational biology, drug discovery, genetic diseases, human, molecular biophysics, signal transduction, structural biology, systems biology, Allosteric Regulation, Amino Acid Motifs, Binding Sites, Humans, Ligands, Protein Binding, Protein Conformation, Receptors, G-Protein-Coupled, Signal Transduction

Journal Title

Elife

Conference Name

Journal ISSN

2050-084X
2050-084X

Volume Title

Publisher

eLife Sciences Publications, Ltd
Sponsorship
Medical Research Council (MC_U105185859)
Novo Nordisk-CAS Research (NNCAS-2017-1-CC)
Shanghai Science and Technology Development Fund (16ZR1448500)
Shanghai Science and Technology Development Fund (16ZR1407100)
National Natural Science Foundation of China (21704064)
National Natural Science Foundation of China (81573479)
National Natural Science Foundation of China (81773792)
National Natural Science Foundation of China (31971178)
National Mega R&D Program for Drug Discovery (2018ZX09735-001)
National Key R&D Program of China (2016YFC0905900)
National Mega R&D Program for Drug Discovery (2018ZX09711002-002-005)
National Key R&D Program of China (2018YFA0507000)
National Natural Science Foundation of China (81872915)
National Institute of General Medical Sciences (GM130142)