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RNA promotes phase separation of glycolysis enzymes into yeast G bodies in hypoxia.

Published version
Peer-reviewed

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Authors

Han, Ting 
Freeberg, Mallory A 
Moresco, James J 
Ghanbari Niaki, Amirhossein 

Abstract

In hypoxic stress conditions, glycolysis enzymes assemble into singular cytoplasmic granules called glycolytic (G) bodies. G body formation in yeast correlates with increased glucose consumption and cell survival. However, the physical properties and organizing principles that define G body formation are unclear. We demonstrate that glycolysis enzymes are non-canonical RNA binding proteins, sharing many common mRNA substrates that are also integral constituents of G bodies. Targeting nonspecific endoribonucleases to G bodies reveals that RNA nucleates G body formation and maintains its structural integrity. Consistent with a phase separation mechanism of biogenesis, recruitment of glycolysis enzymes to G bodies relies on multivalent homotypic and heterotypic interactions. Furthermore, G bodies fuse in vivo and are largely insensitive to 1,6-hexanediol, consistent with a hydrogel-like composition. Taken together, our results elucidate the biophysical nature of G bodies and demonstrate that RNA nucleates phase separation of the glycolysis machinery in response to hypoxic stress.

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Keywords

RNA, S. cerevisiae, cell biology, glycolysis, hypoxia, phase separation, Cytoplasmic Granules, Endoribonucleases, Glycolysis, RNA, Fungal, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins

Journal Title

Elife

Conference Name

Journal ISSN

2050-084X
2050-084X

Volume Title

9

Publisher

eLife Sciences Publications, Ltd
Sponsorship
National Institute of General Medical Sciences (RO1GM129301)
National Institute of General Medical Sciences (P41 GM103533)
National Institute of Neurological Disorders and Stroke (1-RF1-NS113636-01)