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Development of Novel Riboswitches for Synthetic Biology in the Green Alga Chlamydomonas.

Accepted version
Peer-reviewed

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Authors

Nguyen, Ginnie Trinh DT 
Gorchs Rovira, Aleix 
Sayer, Andrew 
Llavero-Pasquina, Marcel 

Abstract

Riboswitches are RNA regulatory elements that bind specific ligands to control gene expression. Because of their modular composition, where a ligand-sensing aptamer domain is combined with an expression platform, riboswitches offer unique tools for synthetic biology applications. Here we took a mutational approach to determine functionally important nucleotide residues in the thiamine pyrophosphate (TPP) riboswitch in the THI4 gene of the model alga Chlamydomonas reinhardtii, allowing us to carry out aptamer swap using THIC aptamers from Chlamydomonas and Arabidopsis thaliana. These chimeric riboswitches displayed a distinct specificity and dynamic range of responses to different ligands. Our studies demonstrate ease of assembly as 5'UTR DNA parts, predictability of output, and utility for controlled production of a high-value compound in Chlamydomonas. The simplicity of riboswitch incorporation in current design platforms will facilitate the generation of genetic circuits to advance synthetic biology and metabolic engineering of microalgae.

Description

Keywords

Chlamydomonas, diterpenoid, metabolic engineering, microalgae, riboswitch, synthetic biology, 5' Untranslated Regions, Algal Proteins, Aptamers, Nucleotide, Chlamydomonas, Gene Expression, Metabolic Engineering, Mutagenesis, Riboswitch, Thiamine Pyrophosphate, Ultraviolet Rays

Journal Title

ACS Synth Biol

Conference Name

Journal ISSN

2161-5063
2161-5063

Volume Title

9

Publisher

American Chemical Society (ACS)

Rights

All rights reserved
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/D006104/1)
Biotechnology and Biological Sciences Research Council (BB/D011043/1)
Biotechnology and Biological Sciences Research Council (BB/M011194/1)
Biotechnology and Biological Sciences Research Council (BB/M018180/1)
Biotechnology and Biological Sciences Research Council (BB/R01860X/1)
Biotechnology and Biological Sciences Research Council (BB/L002957/1)
Biotechnology and Biological Sciences Research Council (BB/I00680X/1)
Biotechnology and Biological Sciences Research Council (BB/D005817/1)
Biotechnology and Biological Sciences Research Council (BB/L014130/1)
European Commission (311956)
BBSRC (1839948)
BBSRC