AIM: Existing phytogeographical frameworks for tropical Africa lack either spatial completeness, unit definitions smaller than the regional scale or a quantitative approach. We investigate whether physical environmental variables can be used to interpolate floristically defined vegetation units, presenting an interpolated, hierarchical, quantitative phytogeographical framework for tropical Africa, which is compared to previously defined regions. LOCATION: Tropical mainland Africa 24°N to 24°S. TAXON: 31,046 vascular plant species and infraspecific taxa. METHODS: We calculate a betasim dissimilarity matrix from a comprehensive whole‐flora database of plant species distributions. We investigate environmental correlates of floristic turnover with local non‐metric multidimensional scaling. We derive a hierarchical biogeographical framework by clustering the dissimilarity matrix. The framework is modelled using a classification decision tree method and 12 physical environmental variables to interpolate and increase the resolution of the framework across the study region. RESULTS: Floristic turnover is related strongly to water availability and temperature, with smaller contributions from land cover, topographic ruggedness and lithology. Region can be predicted with 90% accuracy by the model. We define 19 regions and 99 districts. We find a novel arrangement of the arid regions. Regional subdivision within the savanna biome is supported with minor variation to borders. Within the forests of west and central Africa, our whole‐flora gridded regionalization supports the divisions identified by a previous analysis of trees only. MAIN CONCLUSIONS: Physical environmental variables can be used to predict floristically defined vegetation units with very high accuracy, and the approach could be pursued for other incompletely sampled taxa and areas outside of tropical Africa. Geographical coherence is higher than in previous quantitative phytoregional definitions. For most tropical African vascular plant species, we provide predictions of which species will occur within each mapped district and region of tropical Africa. The framework should be useful for future studies in ecology, evolution and conservation.