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SARS-CoV-2 variants, spike mutations and immune escape.

Accepted version
Peer-reviewed

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Type

Article

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Authors

Carabelli, Alessandro M  ORCID logo  https://orcid.org/0000-0003-3625-4021
Gupta, Ravindra K 
Thomson, Emma C 

Abstract

Although most mutations in the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome are expected to be either deleterious and swiftly purged or relatively neutral, a small proportion will affect functional properties and may alter infectivity, disease severity or interactions with host immunity. The emergence of SARS-CoV-2 in late 2019 was followed by a period of relative evolutionary stasis lasting about 11 months. Since late 2020, however, SARS-CoV-2 evolution has been characterized by the emergence of sets of mutations, in the context of 'variants of concern', that impact virus characteristics, including transmissibility and antigenicity, probably in response to the changing immune profile of the human population. There is emerging evidence of reduced neutralization of some SARS-CoV-2 variants by postvaccination serum; however, a greater understanding of correlates of protection is required to evaluate how this may impact vaccine effectiveness. Nonetheless, manufacturers are preparing platforms for a possible update of vaccine sequences, and it is crucial that surveillance of genetic and antigenic changes in the global virus population is done alongside experiments to elucidate the phenotypic impacts of mutations. In this Review, we summarize the literature on mutations of the SARS-CoV-2 spike protein, the primary antigen, focusing on their impacts on antigenicity and contextualizing them in the protein structure, and discuss them in the context of observed mutation frequencies in global sequence datasets.

Description

Keywords

Amino Acids, Antigenic Variation, COVID-19, COVID-19 Vaccines, Epitopes, Humans, Immune Evasion, Mutation, Protein Conformation, SARS-CoV-2, Spike Glycoprotein, Coronavirus

Journal Title

Nat Rev Microbiol

Conference Name

Journal ISSN

1740-1526
1740-1534

Volume Title

19

Publisher

Springer Science and Business Media LLC

Rights

All rights reserved
Sponsorship
MRC (MC_PC_19027)
MRC (via Imperial College London) (MR/W005611/1)
UK Research and Innovation (MC_PC_19027)
The COVID-19 Genomics UK (COG-UK) Consortium is supported by funding from the UK Medical Research Council (MRC), part of UK Research and Innovation, the UK National Institute of Health Research and Genome Research Limited, operating as the Wellcome Sanger Institute.