Repository logo
 

RNA G-quadruplex structures control ribosomal protein production.

Accepted version
Peer-reviewed

No Thumbnail Available

Type

Article

Change log

Authors

Varshney, Dhaval 
Cuesta, Sergio Martinez 
Herdy, Barbara 
Abdullah, Ummi Binti 

Abstract

Four-stranded G-quadruplex (G4) structures form from guanine-rich tracts, but the extent of their formation in cellular RNA and details of their role in RNA biology remain poorly defined. Herein, we first delineate the presence of endogenous RNA G4s in the human cytoplasmic transcriptome via the binding sites of G4-interacting proteins, DDX3X (previously published), DHX36 and GRSF1. We demonstrate that a sub-population of these RNA G4s are reliably detected as folded structures in cross-linked cellular lysates using the G4 structure-specific antibody BG4. The 5' UTRs of protein coding mRNAs show significant enrichment in folded RNA G4s, particularly those for ribosomal proteins. Mutational disruption of G4s in ribosomal protein UTRs alleviates translation in vitro, whereas in cells, depletion of G4-resolving helicases or treatment with G4-stabilising small molecules inhibit the translation of ribosomal protein mRNAs. Our findings point to a common mode for translational co-regulation mediated by G4 structures. The results reveal a potential avenue for therapeutic intervention in diseases with dysregulated translation, such as cancer.

Description

Keywords

5' Untranslated Regions, Binding Sites, G-Quadruplexes, Humans, Nucleic Acid Conformation, Protein Binding, RNA, Messenger, Ribosomal Proteins

Journal Title

Sci Rep

Conference Name

Journal ISSN

2045-2322
2045-2322

Volume Title

Publisher

Springer Science and Business Media LLC
Sponsorship
Cancer Research UK (CB4330)
Cancer Research UK (C9681/A29214)
European Research Council (339778)
Wellcome Trust (209441/Z/17/Z)
ERC Herchel Smith Funds