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An Open Drug Discovery Competition: Experimental Validation of Predictive Models in a Series of Novel Antimalarials.

Published version
Peer-reviewed

Type

Article

Change log

Authors

Aithani, Laksh 
Anderson, Mark 
Cardoso-Silva, Jonathan 

Abstract

The Open Source Malaria (OSM) consortium is developing compounds that kill the human malaria parasite, Plasmodium falciparum, by targeting PfATP4, an essential ion pump on the parasite surface. The structure of PfATP4 has not been determined. Here, we describe a public competition created to develop a predictive model for the identification of PfATP4 inhibitors, thereby reducing project costs associated with the synthesis of inactive compounds. Competition participants could see all entries as they were submitted. In the final round, featuring private sector entrants specializing in machine learning methods, the best-performing models were used to predict novel inhibitors, of which several were synthesized and evaluated against the parasite. Half possessed biological activity, with one featuring a motif that the human chemists familiar with this series would have dismissed as "ill-advised". Since all data and participant interactions remain in the public domain, this research project "lives" and may be improved by others.

Description

Keywords

Antimalarials, Calcium-Transporting ATPases, Drug Discovery, Enzyme Inhibitors, Humans, Models, Biological, Plasmodium falciparum, Structure-Activity Relationship

Journal Title

J Med Chem

Conference Name

Journal ISSN

0022-2623
1520-4804

Volume Title

Publisher

American Chemical Society (ACS)
Sponsorship
The Royal Society (uf130122)
Royal Society (RGF/EA/180034)
Royal Society (URF\R\201002)
Engineering and Physical Sciences Research Council (EP/L015552/1)