An Open Drug Discovery Competition: Experimental Validation of Predictive Models in a Series of Novel Antimalarials.

Authors
Aithani, Laksh 
Anderson, Mark 
Cardoso-Silva, Jonathan 

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Type
Article
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Abstract

The Open Source Malaria (OSM) consortium is developing compounds that kill the human malaria parasite, Plasmodium falciparum, by targeting PfATP4, an essential ion pump on the parasite surface. The structure of PfATP4 has not been determined. Here, we describe a public competition created to develop a predictive model for the identification of PfATP4 inhibitors, thereby reducing project costs associated with the synthesis of inactive compounds. Competition participants could see all entries as they were submitted. In the final round, featuring private sector entrants specializing in machine learning methods, the best-performing models were used to predict novel inhibitors, of which several were synthesized and evaluated against the parasite. Half possessed biological activity, with one featuring a motif that the human chemists familiar with this series would have dismissed as "ill-advised". Since all data and participant interactions remain in the public domain, this research project "lives" and may be improved by others.

Publication Date
2021-11-25
Online Publication Date
2021-11-08
Acceptance Date
Keywords
Antimalarials, Calcium-Transporting ATPases, Drug Discovery, Enzyme Inhibitors, Humans, Models, Biological, Plasmodium falciparum, Structure-Activity Relationship
Journal Title
J Med Chem
Journal ISSN
0022-2623
1520-4804
Volume Title
Publisher
American Chemical Society (ACS)
Sponsorship
The Royal Society (uf130122)
Royal Society (RGF/EA/180034)
Royal Society (URF\R\201002)
Engineering and Physical Sciences Research Council (EP/L015552/1)