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A new strategy for hit generation: Novel in cellulo active inhibitors of CYP121A1 from Mycobacterium tuberculosis via a combined X-ray crystallographic and phenotypic screening approach (XP screen).

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Frederickson, Martyn 
Selvam, Irwin R 
Evangelopoulos, Dimitrios 
McLean, Kirsty J 
Katariya, Mona M 

Abstract

There is a pressing need for new drugs against tuberculosis (TB) to combat the growing resistance to current antituberculars. Herein a novel strategy is described for hit generation against promising TB targets involving X-ray crystallographic screening in combination with phenotypic screening. This combined approach (XP Screen) affords both a validation of target engagement as well as determination of in cellulo activity. The utility of this method is illustrated by way of an XP Screen against CYP121A1, a cytochrome P450 enzyme from Mycobacterium tuberculosis (Mtb) championed as a validated drug discovery target. A focused screening set was synthesized and tested by such means, with several members of the set showing promising activity against Mtb strain H37Rv. One compound was observed as an X-ray hit against CYP121A1 and showed improved activity against Mtb strain H37Rv under multiple assay conditions (pan-assay activity). Data obtained during X-ray crystallographic screening were utilized in a structure-based campaign to design a limited number of analogues (less than twenty), many of which also showed pan-assay activity against Mtb strain H37Rv. These included the benzo[b][1,4]oxazine derivative (MIC90 6.25 μM), a novel hit compound suitable as a starting point for a more involved hit to lead candidate medicinal chemistry campaign.

Description

Keywords

CYP121, Drug discovery, Mycobacterium tuberculosis, Tuberculosis, X-ray crystallography, Antitubercular Agents, Drug Design, Humans, Mycobacterium tuberculosis, Tuberculosis, X-Rays

Journal Title

Eur J Med Chem

Conference Name

Journal ISSN

0223-5234
1768-3254

Volume Title

Publisher

Elsevier BV
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/R009775/1)