Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms
de Vries, Stefan
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Kalmar, L., Gupta, S., Kean, I., Ba, X., Hadjirin, N., Lay, E., de Vries, S., et al. (2022). Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms [Dataset]. https://doi.org/10.17863/CAM.80312
The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).
The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.
antimicrobial resistance, Bacterial genomes, Hi-C, Metagenomics
Related Item: https://github.com/lkalmar/HAM-ART
This work was funded by Medical Research Council grant MR/N002660/1.
This record's DOI: https://doi.org/10.17863/CAM.80312
BSD 3-Clause License