Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms

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Authors
  Kalmar, Lajos
Gupta, Srishti
  Kean, Iain
Ba, Xiaoliang
Hadjirin, Nazreen
Lay, Elizabeth
de Vries, Stefan
Publication Date
2022-01-26
Type
Dataset
Metadata
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Citation
Kalmar, L., Gupta, S., Kean, I., Ba, X., Hadjirin, N., Lay, E., de Vries, S., et al. (2022). Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms [Dataset]. https://doi.org/10.17863/CAM.80312
Description
The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).
Format
The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.
Keywords
Metagenomics, Bacterial genomes, Hi-C, antimicrobial resistance
Relationships
Related Item: https://github.com/lkalmar/HAM-ART
Publication Reference: https://www.repository.cam.ac.uk/handle/1810/335621
Sponsorship
This work was funded by Medical Research Council grant MR/N002660/1.
Identifiers
This record's DOI: https://doi.org/10.17863/CAM.80312
Rights
BSD 3-Clause License
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