Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms

Kalmar, L., Gupta, S., Kean, I., Ba, X., Hadjirin, N., Lay, E., de Vries, S., et al. (2022). Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms [Dataset]. https://doi.org/10.17863/CAM.80312

Description

The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).

Format

The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.

Keywords

antimicrobial resistance, Bacterial genomes, Hi-C, Metagenomics

Relationships

Related Item: https://github.com/lkalmar/HAM-ART

Publication Reference: https://doi.org/10.1371/journal.pgen.1009776 https://www.repository.cam.ac.uk/handle/1810/335621

Sponsorship

This work was funded by Medical Research Council grant MR/N002660/1.

Identifiers

This record's DOI: https://doi.org/10.17863/CAM.80312

Rights

BSD 3-Clause License

Statistics

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