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dc.contributor.authorKalmar, Lajos
dc.contributor.authorGupta, Srishti
dc.contributor.authorKean, Iain
dc.contributor.authorBa, Xiaoliang
dc.contributor.authorHadjirin, Nazreen
dc.contributor.authorLay, Elizabeth
dc.contributor.authorde Vries, Stefan
dc.contributor.authorBateman, Michael
dc.contributor.authorBartlett, Harriett
dc.contributor.authorHernandez-Garcia, Juan
dc.contributor.authorTucker, Alexander
dc.contributor.authorRestiff, Olivier
dc.contributor.authorStevens, Mark
dc.contributor.authorWood, James
dc.contributor.authorMaskell, Duncan
dc.contributor.authorGrant, Andrew
dc.contributor.authorHolmes, Mark
dc.date.accessioned2022-01-26T15:02:38Z
dc.date.available2022-01-26T15:02:38Z
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/332944
dc.descriptionThe deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).
dc.description.sponsorshipThis work was funded by Medical Research Council grant MR/N002660/1.
dc.formatThe dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.
dc.rightsBSD 3-Clause License
dc.subjectMetagenomics
dc.subjectBacterial genomes
dc.subjectHi-C
dc.subjectantimicrobial resistance
dc.titleFinal Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms
dc.typeDataset
dc.publisher.departmentMrc Toxicology Unit
dc.publisher.departmentDepartment of Paediatrics
dc.date.updated2022-01-23T07:48:43Z
dc.identifier.doi10.17863/CAM.80312
datacite.contributor.supervisorHolmes, Mark
dcterms.formatThe deposited files are compressed in .tar.gz format can be uncompressed in Linux / MacOS terminal by "tar -xzf filename.tar.gz". Each compressed archive file contains a farm specific folder with appropriately named FASTA files. Each file is described and listed in the supplementary material of the linked publication.
dc.contributor.orcidKalmar, Lajos [0000-0003-3691-8350]
dc.contributor.orcidKean, Iain [0000-0003-1066-8285]
dc.contributor.orcidWood, James [0000-0002-0258-3188]
dc.contributor.orcidGrant, Andrew [0000-0001-9746-2989]
dc.contributor.orcidHolmes, Mark [0000-0002-5454-1625]
dcterms.relationhttps://github.com/lkalmar/HAM-ART
rioxxterms.typeOther
datacite.issupplementto.urlhttps://www.repository.cam.ac.uk/handle/1810/335621
cam.depositDate2022-01-23
pubs.licence-identifierapollo-deposit-licence-2-1
pubs.licence-display-nameApollo Repository Deposit Licence Agreement


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