Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms
| dc.contributor.author | Kalmar, Lajos | |
| dc.contributor.author | Gupta, Srishti | |
| dc.contributor.author | Kean, Iain | |
| dc.contributor.author | Ba, Xiaoliang | |
| dc.contributor.author | Hadjirin, Nazreen | |
| dc.contributor.author | Lay, Elizabeth | |
| dc.contributor.author | de Vries, Stefan | |
| dc.contributor.author | Bateman, Michael | |
| dc.contributor.author | Bartlett, Harriett | |
| dc.contributor.author | Hernandez-Garcia, Juan | |
| dc.contributor.author | Tucker, Alexander | |
| dc.contributor.author | Restiff, Olivier | |
| dc.contributor.author | Stevens, Mark | |
| dc.contributor.author | Wood, James | |
| dc.contributor.author | Maskell, Duncan | |
| dc.contributor.author | Grant, Andrew | |
| dc.contributor.author | Holmes, Mark | |
| dc.date.accessioned | 2022-01-26T15:02:38Z | |
| dc.date.available | 2022-01-26T15:02:38Z | |
| dc.identifier.uri | https://www.repository.cam.ac.uk/handle/1810/332944 | |
| dc.description | The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition). | |
| dc.description.sponsorship | This work was funded by Medical Research Council grant MR/N002660/1. | |
| dc.format | The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page. | |
| dc.rights | BSD 3-Clause License | |
| dc.subject | antimicrobial resistance | |
| dc.subject | Bacterial genomes | |
| dc.subject | Hi-C | |
| dc.subject | Metagenomics | |
| dc.title | Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms | |
| dc.type | Dataset | |
| dc.publisher.department | Mrc Toxicology Unit | |
| dc.publisher.department | Department of Paediatrics | |
| dc.date.updated | 2022-01-23T07:48:43Z | |
| dc.identifier.doi | 10.17863/CAM.80312 | |
| datacite.contributor.supervisor | Holmes, Mark | |
| dcterms.format | The deposited files are compressed in .tar.gz format can be uncompressed in Linux / MacOS terminal by "tar -xzf filename.tar.gz". Each compressed archive file contains a farm specific folder with appropriately named FASTA files. Each file is described and listed in the supplementary material of the linked publication. | |
| dc.contributor.orcid | Kalmar, Lajos [0000-0003-3691-8350] | |
| dc.contributor.orcid | Kean, Iain [0000-0003-1066-8285] | |
| dc.contributor.orcid | Wood, James [0000-0002-0258-3188] | |
| dc.contributor.orcid | Grant, Andrew [0000-0001-9746-2989] | |
| dc.contributor.orcid | Holmes, Mark [0000-0002-5454-1625] | |
| dcterms.relation | https://github.com/lkalmar/HAM-ART | |
| rioxxterms.type | Other | |
| datacite.issupplementto.doi | https://doi.org/10.1371/journal.pgen.1009776 | |
| datacite.issupplementto.url | https://www.repository.cam.ac.uk/handle/1810/335621 | |
| cam.depositDate | 2022-01-23 | |
| pubs.licence-identifier | apollo-deposit-licence-2-1 | |
| pubs.licence-display-name | Apollo Repository Deposit Licence Agreement |
