Research data supporting the study titled 'Large Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families'.
| dc.contributor.author | Monzon, Vivian | |
| dc.contributor.author | Bateman, Alex | |
| dc.date.accessioned | 2022-03-15T10:30:54Z | |
| dc.date.available | 2022-03-15T10:30:54Z | |
| dc.identifier.uri | https://www.repository.cam.ac.uk/handle/1810/335004 | |
| dc.description | This repository includes the potential Fibrillar Adhesin-like (FA-like) proteins in Firmicutes and Actinobacteria, which where predicted within this study using a Random Forest classification approach. Next to the UniProt protein identifier, the calculated feature properties are given. Additionally, this repository contains the pdb files of the N-terminal clusters in Firmicutes, which were found in the predicted FA-like proteins with minimal 4 known stalk domains and no known adhesive domain. The structures were predicted using AlphaFold2. | |
| dc.format | The FA-like proteins were predicted with a Random Forest classification approach (https://github.com/VivianMonzon/FAL_prediction). The structures were predicted using AlphaFold2 (https://www.nature.com/articles/s41586-021-03819-2). | |
| dc.rights | Attribution 4.0 International (CC BY 4.0) | |
| dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | |
| dc.subject | Fibrillar adhesins | |
| dc.subject | Host-pathogen interaction | |
| dc.subject | RandomForest classification | |
| dc.subject | Protein domain families | |
| dc.subject | Adhesive domains | |
| dc.subject | Structure prediction methods | |
| dc.subject | AlphaFold2 | |
| dc.title | Research data supporting the study titled 'Large Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families'. | |
| dc.type | Dataset | |
| dc.publisher.department | European Bioinformatics Institute Student | |
| dc.date.updated | 2022-03-11T10:43:35Z | |
| dc.identifier.doi | 10.17863/CAM.82322 | |
| rioxxterms.licenseref.uri | https://creativecommons.org/licenses/by/4.0/ | |
| datacite.contributor.supervisor | Bateman, Alex | |
| dcterms.format | tsv, pdb | |
| rioxxterms.type | Other | |
| cam.depositDate | 2022-03-11 | |
| pubs.licence-identifier | apollo-deposit-licence-2-1 | |
| pubs.licence-display-name | Apollo Repository Deposit Licence Agreement |
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Except where otherwise noted, this item's licence is described as Attribution 4.0 International (CC BY 4.0)