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Second Order Interactions in Solid State Systems


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Authors

Bird, Craig Malcolm 

Abstract

Non-covalent interatomic interactions, particularly hydrogen bonds, have been studied through systematic analysis of published crystallographic data, and through the determination of novel crystal structures. Chapters 1-3 give relevant background on crystal structure analysis and describe the available crystallographic databases.

Chapters 4 and 5 utilise the Cambridge Structural Database to examine the hydrogen bond acceptor abilities of nitrogen and sulphur. Chapter 4 examines non bonded N---H interactions in the Csp2-NR2 fragment and, specifically, hydrogen bond formation during the Nsp2➔Nsp3 transition. Chapter 5 investigates the hydrogen bonds formed by 'univalent' (i.e C=S) and 'divalent' (i.e -S-) sulphur, and compares the results with data for their oxygen analogues.

Chapter 6 describes a novel method (NIPMAT) for representing non-bonded interactions in crystal structures. The shortest contacts for each atom in the asymmetric unit to atoms in neighbouring molecules are generated and displayed in a matrix form. A computational method is developed for visually representing and comparing the non-bonded contacts in two different crystal structures. A comparison of pairs of polymorphic structures is used to show how the method is more informative than standard visual or numerical comparisons.

Chapter 7 describes eight crystal structures: A sixteen-membered aluminium ring compound, [C33H40AI4N4O8], a chiral amidolithium tetrahydrofuran complex, [C40H52LI2N2O2], a hydrogen bonded primary amine-phosphine oxide adduct, [C14H27N4O4PS], an organic phosphus oxide, [C37H38NO2P], an aqua magnesium complex, [C26H50MgN14O4P2S2], a tetrameric lithium complex, [C60H72Li4N4O12], lithium dithioato tetramethylethylene diamine [C13H23LiN4S2], l,4-dimethoxy-2-(pyrazol-3-yl)-benzene, [C11H12N2O2].

Description

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Date

Advisors

Keywords

Interatomic interactions, Solid state systems

Qualification

Doctor of Philosophy (PhD)

Awarding Institution

University of Cambridge