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Synthesis of covalently linked knotted cage frameworks

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Abstract

Interwoven molecular structures underpin the functions of many biomolecules, yet synthesizing artificial topologically complex structures in high yield remains challenging. Here we describe a streamlined, high-yield one-pot synthesis of knotted cage frameworks by using a subcomponent designed to bridge over the faces of a predesigned cage framework. A ZnII4L3 (where L corresponds to a tritopic pyridyl-imine ligand that coordinates to the metal vertices) open-faced cage framework was employed as the basis for a topologically chiral perplexane, and a ZnII4L4 tetrahedron was built into a topologically chiral trefoil tetrahedron. Both interwoven architectures can be prepared through one-pot subcomponent self-assembly from a trialdehyde, the bridging triamine and a zinc(II) salt. The trefoil tetrahedron was observed to mechanically lock guests inside the cavity, resulting in a guest exchange half-life 17,000 times longer than that of the original tetrahedral cage. Both cage frameworks were reduced and demetallated to yield metal-free interwoven structures, with the perplexane producing an achiral product and the trefoil tetrahedron maintaining its topological chirality. Our strategy may enable the knotting of many existing cage frameworks produced using subcomponent self assembly, enhancing their robustness and ability to lock guests inside.

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Acknowledgements: This work was supported by the Defense Advanced Research Projects Agency (DARPA) MIMS programme cooperative agreement HR00112420301 (J.R.N.). The views, opinions and/or findings expressed are those of the authors and should not be interpreted as representing the official views or policies of the Department of Defense or the US Government. This study was also supported by the European Research Council (grant no. 695009 (J.R.N.)) and the UK Engineering and Physical Sciences Research Council (EPSRC, grant no. EP/T031603/1 (J.R.N.), grant no. EP/S024220/1 (P.C.P.T.)). We thank the Department of Chemistry NMR facility, University of Cambridge, for performing some NMR experiments, the EPSRC UK National Mass Spectrometry Facility at Swansea University for carrying out MALDI-TOF mass spectrometry and the Diamond Light Source (UK) for synchrotron beamtime on I19 (CY29890). S.Z. and P.P. are also grateful to the Italian Ministry of University and Research for financial support under the National Recovery and Resilience Plan (NRRP) and to CINECA under the ISCRA initiative for high-performance computing resources and support.

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Journal Title

Nature Synthesis

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Journal ISSN

2731-0582

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4

Publisher

Nature Publishing Group UK

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Except where otherwised noted, this item's license is described as http://creativecommons.org/licenses/by/4.0/
Sponsorship
United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) (HR00112420301)
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) (695009)
RCUK | Engineering and Physical Sciences Research Council (EPSRC) (EP/T031603/1, EP/S024220/1)