Energy Landscapes of Mini-Dumbbell DNA Octanucleotides.
Published version
Repository URI
Repository DOI
Change log
Authors
Klimavicz, James S
Abstract
Single-stranded DNA structures play a significant role in biological systems, in particular during replication, translation, and DNA repair. Tracts of simple repetitive DNA are associated with slipped-strand mispairing, which can lead to genetic diseases. Recent NMR studies of TTTA and CCTG repeats have shown that these sequences form mini-dumbbells (MDBs), leading to frameshift mutations. Here we explore the energy landscapes of (CCTG)2 and (TTTA)2, which are currently the smallest known molecules to form MDBs. While (CCTG)2 MDBs are stable, (TTTA)2 exhibits numerous other structures with lower energies. A key factor identified in the stabilization of MDB structures is the bonding strength between residues 1 and 4, and 5 and 8.
Description
Keywords
Base Sequence, DNA, Frameshift Mutation, Models, Molecular, Nucleic Acid Conformation, Oligonucleotides, Thermodynamics
Journal Title
J Chem Theory Comput
Conference Name
Journal ISSN
1549-9618
1549-9626
1549-9626
Volume Title
14
Publisher
American Chemical Society (ACS)
Publisher DOI
Sponsorship
EPSRC (1652488)
Engineering and Physical Sciences Research Council (EP/N035003/1)
Engineering and Physical Sciences Research Council (EP/N035003/1)
PhD studentship EPSRC