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Thermodynamic profiles for cotranslational trigger factor substrate recognition.

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Cassaignau, Anaïs ME  ORCID logo  https://orcid.org/0000-0003-3963-082X
Kumar, Pavan C 

Abstract

Molecular chaperones are central to the maintenance of proteostasis in living cells. A key member of this protein family is trigger factor (TF), which acts throughout the protein life cycle and has a ubiquitous role as the first chaperone encountered by proteins during synthesis. However, our understanding of how TF achieves favorable interactions with such a diverse substrate base remains limited. Here, we use microfluidics to reveal the thermodynamic determinants of this process. We find that TF binding to empty 70S ribosomes is enthalpy-driven, with micromolar affinity, while nanomolar affinity is achieved through a favorable entropic contribution for both intrinsically disordered and folding-competent nascent chains. These findings suggest a general mechanism for cotranslational TF function, which relies on occupation of the exposed TF-substrate binding groove rather than specific complementarity between chaperone and nascent chain. These insights add to our wider understanding of how proteins can achieve broad substrate specificity.

Description

Keywords

Thermodynamics, Substrate Specificity, Protein Binding, Protein Biosynthesis, Escherichia coli Proteins, Ribosomes, Protein Folding, Peptidylprolyl Isomerase

Journal Title

Sci Adv

Conference Name

Journal ISSN

2375-2548
2375-2548

Volume Title

Publisher

American Association for the Advancement of Science (AAAS)