Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms

Name: Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms
Published: 2022-01-26T15:02:38Z
Keywords: antimicrobial resistance, Bacterial genomes, Hi-C, Metagenomics

Kalmar, Lajos; Gupta, Srishti; Kean, Iain; Ba, Xiaoliang; Hadjirin, Nazreen; Lay, Elizabeth; de Vries, Stefan; Bateman, Michael; Bartlett, Harriett; Hernandez-Garcia, Juan; Tucker, Alexander; Restiff, Olivier; Stevens, Mark; Wood, James; Maskell, Duncan; Grant, Andrew; Holmes, Mark

doi:10.17863/CAM.80312

Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms

Repository URI

https://www.repository.cam.ac.uk/handle/1810/332944

Repository DOI

https://doi.org/10.17863/CAM.80312

Files

CV1.tar.gz (187.75 MB)

CV2.tar.gz (440.01 MB)

CV3.tar.gz (513.93 MB)

CV5.tar.gz (155.78 MB)

CV4.tar.gz (564.67 MB)

Type

Dataset

Authors

Kalmar, Lajos

https://orcid.org/0000-0003-3691-8350

Gupta, Srishti

Kean, Iain

https://orcid.org/0000-0003-1066-8285

Ba, Xiaoliang

Hadjirin, Nazreen

Description

The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).

Software / Usage instructions

The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.