Final Hi-C metagenomics assemblies from faecal samples on high- and low-antibiotics usage farms
Repository URI
Repository DOI
No Thumbnail Available
Type
Dataset
Change log
Authors
Gupta, Srishti
Ba, Xiaoliang
Hadjirin, Nazreen
Description
The deposited compressed files (.tar.gz format) contain all metagenome assembled genomes for each pig farm respectively. The sampling method, laboratory and bioinformatics pipeline are described in detail in the linked publication (under review at the time of the data deposition).
Version
Software / Usage instructions
The dataset was generated by using the HAM-ART pipeline. The pipeline is freely available on GitHub (https://github.com/lkalmar/HAM-ART). Detailed description on its usage is provided on the GitHub page.
Keywords
antimicrobial resistance, Bacterial genomes, Hi-C, Metagenomics
Publisher
Rights
BSD 3-Clause License
Sponsorship
This work was funded by Medical Research Council grant MR/N002660/1.