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Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Published version
Peer-reviewed

Type

Article

Change log

Authors

Raden, Martin 
Ali, Syed M 
Alkhnbashi, Omer S 
Busch, Anke 
Costa, Fabrizio 

Abstract

The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.

Description

Keywords

Algorithms, Base Sequence, Internet, Nucleic Acid Conformation, RNA, Sequence Alignment, Sequence Analysis, RNA, Software, Structure-Activity Relationship

Journal Title

Nucleic Acids Res

Conference Name

Journal ISSN

0305-1048
1362-4962

Volume Title

46

Publisher

Oxford University Press (OUP)