Dataset for: Targeted multispectral filter array design for endoscopic cancer detection in the gastrointestinal tract
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Description of methods used for collection/generation of data:
Datasets were previously published and were collected as described in https://doi.org/10.1117/1.JBO.26.10.106002 and https://doi.org/10.1002/jbio.202100078).
The folder “Datasets” contains curated spectral datasets used based on previous clinical trials for Oesophageal and Colon tissues these are read by the respective Python notebooks
The folder “Optimization” includes the Python notebooks used to generate the optimal filter arrays
Resulting variables saved to file: [classification method]_[tissue type]¬_varibles.npz ( eg. “kNN_Ose_variables.npz”)
The saved variables include: for each number of bands N ‘bands_[N]' centre wavelengths of the selected bands (nM) 'bws_[N]' FWHM of bandwidths of the selected bands (nM) ' pattern_[N]' optimal arrangement of selected bands ' accu_[N]' spectral classification accuracy for optimal bands 'spatial_acc_[N]' spatial classification accuracy for optimal bands 'labels_pred_[N]' classification labels
These variables were condensed in “Band Optimization Summary 23 July 23.xlsx” for easier interpretation
“Band Optimization Summary 23 July 23.xlsx” is a summary of the optimized filters
“Summary.ipynb” plots the figures used in the paper and SI
All information is summarised in the readme.doc file.
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Cancer Research UK (C14303/A17197)
Cancer Research UK (C47594/A26851)
Cancer Research UK (21102)
Engineering and Physical Sciences Research Council (EP/R003599/1)