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The regulation and functions of DNA and RNA G-quadruplexes.

Accepted version
Peer-reviewed

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Authors

Varshney, Dhaval 
Spiegel, Jochen 
Zyner, Katherine 
Tannahill, David 
Balasubramanian, Shankar  ORCID logo  https://orcid.org/0000-0002-0281-5815

Abstract

DNA and RNA can adopt various secondary structures. Four-stranded G-quadruplex (G4) structures form through self-recognition of guanines into stacked tetrads, and considerable biophysical and structural evidence exists for G4 formation in vitro. Computational studies and sequencing methods have revealed the prevalence of G4 sequence motifs at gene regulatory regions in various genomes, including in humans. Experiments using chemical, molecular and cell biology methods have demonstrated that G4s exist in chromatin DNA and in RNA, and have linked G4 formation with key biological processes ranging from transcription and translation to genome instability and cancer. In this Review, we first discuss the identification of G4s and evidence for their formation in cells using chemical biology, imaging and genomic technologies. We then discuss possible functions of DNA G4s and their interacting proteins, particularly in transcription, telomere biology and genome instability. Roles of RNA G4s in RNA biology, especially in translation, are also discussed. Furthermore, we consider the emerging relationships of G4s with chromatin and with RNA modifications. Finally, we discuss the connection between G4 formation and synthetic lethality in cancer cells, and recent progress towards considering G4s as therapeutic targets in human diseases.

Description

Keywords

Animals, DNA, G-Quadruplexes, Genomic Instability, Genomics, Humans, Promoter Regions, Genetic, RNA, Regulatory Sequences, Nucleic Acid, Structure-Activity Relationship

Journal Title

Nat Rev Mol Cell Biol

Conference Name

Journal ISSN

1471-0072
1471-0080

Volume Title

21

Publisher

Springer Science and Business Media LLC

Rights

All rights reserved
Sponsorship
Cancer Research UK (CB4330)
Wellcome Trust (099232/Z/12/Z)
Cancer Research UK (18618)
European Commission Horizon 2020 (H2020) Marie Sk?odowska-Curie actions (747297)
The Balasubramanian laboratory is supported by Cancer Research UK core and programme award funding (C14303/A17197; C9681/A18618); S.B. is a Senior Investigator of the Wellcome Trust (099232/Z/12/Z); and D.V. is a Herchel Smith postdoctoral fellow. J.S. gratefully acknowledges EU H2020 Framework Programme funding (H2020-MSCA-IF-2016, ID: 747297-QAPs).