Development of Novel Riboswitches for Synthetic Biology in the Green Alga Chlamydomonas.


Change log
Authors
Nguyen, Ginnie Trinh DT 
Gorchs Rovira, Aleix 
Sayer, Andrew 
Llavero-Pasquina, Marcel 
Abstract

Riboswitches are RNA regulatory elements that bind specific ligands to control gene expression. Because of their modular composition, where a ligand-sensing aptamer domain is combined with an expression platform, riboswitches offer unique tools for synthetic biology applications. Here we took a mutational approach to determine functionally important nucleotide residues in the thiamine pyrophosphate (TPP) riboswitch in the THI4 gene of the model alga Chlamydomonas reinhardtii, allowing us to carry out aptamer swap using THIC aptamers from Chlamydomonas and Arabidopsis thaliana. These chimeric riboswitches displayed a distinct specificity and dynamic range of responses to different ligands. Our studies demonstrate ease of assembly as 5'UTR DNA parts, predictability of output, and utility for controlled production of a high-value compound in Chlamydomonas. The simplicity of riboswitch incorporation in current design platforms will facilitate the generation of genetic circuits to advance synthetic biology and metabolic engineering of microalgae.

Description
Keywords
Chlamydomonas, diterpenoid, metabolic engineering, microalgae, riboswitch, synthetic biology, 5' Untranslated Regions, Algal Proteins, Aptamers, Nucleotide, Chlamydomonas, Gene Expression, Metabolic Engineering, Mutagenesis, Riboswitch, Thiamine Pyrophosphate, Ultraviolet Rays
Journal Title
ACS Synth Biol
Conference Name
Journal ISSN
2161-5063
2161-5063
Volume Title
9
Publisher
American Chemical Society (ACS)
Rights
All rights reserved
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/D006104/1)
Biotechnology and Biological Sciences Research Council (BB/D011043/1)
Biotechnology and Biological Sciences Research Council (BB/M011194/1)
Biotechnology and Biological Sciences Research Council (BB/M018180/1)
Biotechnology and Biological Sciences Research Council (BB/R01860X/1)
Biotechnology and Biological Sciences Research Council (BB/L002957/1)
Biotechnology and Biological Sciences Research Council (BB/I00680X/1)
Biotechnology and Biological Sciences Research Council (BB/D005817/1)
Biotechnology and Biological Sciences Research Council (BB/L014130/1)
European Commission (311956)
BBSRC (1839948)
BBSRC