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Dynamic conformational changes of a tardigrade group-3 late embryogenesis abundant protein modulate membrane biophysical properties.

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Peer-reviewed

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Abstract

A number of intrinsically disordered proteins (IDPs) encoded in stress-tolerant organisms, such as tardigrade, can confer fitness advantage and abiotic stress tolerance when heterologously expressed. Tardigrade-specific disordered proteins including the cytosolic-abundant heat-soluble proteins are proposed to confer stress tolerance through vitrification or gelation, whereas evolutionarily conserved IDPs in tardigrades may contribute to stress tolerance through other biophysical mechanisms. In this study, we characterized the mechanism of action of an evolutionarily conserved, tardigrade IDP, HeLEA1, which belongs to the group-3 late embryogenesis abundant (LEA) protein family. HeLEA1 homologs are found across different kingdoms of life. HeLEA1 is intrinsically disordered in solution but shows a propensity for helical structure across its entire sequence. HeLEA1 interacts with negatively charged membranes via dynamic disorder-to-helical transition, mainly driven by electrostatic interactions. Membrane interaction of HeLEA1 is shown to ameliorate excess surface tension and lipid packing defects. HeLEA1 localizes to the mitochondrial matrix when expressed in yeast and interacts with model membranes mimicking inner mitochondrial membrane. Yeast expressing HeLEA1 shows enhanced tolerance to hyperosmotic stress under nonfermentative growth and increased mitochondrial membrane potential. Evolutionary analysis suggests that although HeLEA1 homologs have diverged their sequences to localize to different subcellular organelles, all homologs maintain a weak hydrophobic moment that is characteristic of weak and reversible membrane interaction. We suggest that such dynamic and weak protein-membrane interaction buffering alterations in lipid packing could be a conserved strategy for regulating membrane properties and represent a general biophysical solution for stress tolerance across the domains of life.

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Acknowledgements: The authors thank I. Chen, A. Gunnarson, E. Rhoades, R. Kriwacki, A. Elazar, and B. Lang for reading and critical comments on the manuscript; A. Carter and C. Lau for helping with protein purification; E. Derivery, J. Watson, and H. McMahon for helping with GUV construction; and Y. Ohashi for kindly providing the yeast strain for imaging. The authors thank T. Boothby for providing the original plasmid hosting tardigrade proteins. They thank J. Lu, G. Slodkowicz, Z. Shi, and Y. Yagita for helpful discussions on statistical analysis and interpretation of the data. They also thank Diamond Light Source for Beamtime (proposal SM24985) and the staff of Beamlines B21 for assistance with SAXS data collection; S. Mclaughlin and LMB Biophysics Instrument Centre for assistance in CD and fluorescence data collection; J. Howe and the LMB light microscopy team for assistance in microscopy; M. Daly and the LMB cell sorting facility for assistance in flow cytometry; LMB Scientific Computing for providing computational resources for simulation; and LMB media and glass wash for helping to prepare media and plates.


Funder: United Kingdom Research and Innovation; DOI: https://doi.org/10.13039/100014013

Journal Title

PNAS Nexus

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Journal ISSN

2752-6542
2752-6542

Volume Title

3

Publisher

Oxford University Press (OUP)

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Except where otherwised noted, this item's license is described as https://creativecommons.org/licenses/by/4.0/
Sponsorship
UK Medical Research Council (MRC_UP_1201/10, MC_U105185859)
Research Grant Council of Hong Kong (26303018, 16309721)
SFPBRNS scheme from the University of Hong Kong (201909185073)
European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie (838945)