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Activity-enhanced DNAzyme for design of label-free copper(II) biosensor.

Published version
Peer-reviewed

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Authors

Etheridge, William 
Brossard, Frederic 
Zheng, Sitan 
Moench, Svenja 

Abstract

Metal ion-driven, DNA-cleaving DNAzymes are characterised by high selectivity and specificity. However, their use for metal ion sensing remains largely unexplored due to long reaction times and poor reaction yields relative to RNA-cleaving DNAzymes and other sensing strategies. Herein we present a study demonstrating a significant rate enhancement of a copper-selective DNA cleaving DNAzyme by both polydopamine (PDA) and gold (Au) nanoparticles (NPs). PDA NPs enhance the reaction through the production of hydrogen peroxide, while for AuNPs the enhancement is aided by the presence of citrate surface moeities, both of which drive the oxidative cleavage of the substrate. A 50-fold enhancement for PDA NPs makes the combination of PDA and DNAzyme suitable for a practical application as a sensitive biosensor for Cu(II) ions. Using DNAzyme deposition onto a gold electrode followed by Polydopamine Assisted DNA Immobilisation (PADI), we achieve a cost-effective, label-free and fast (within 15 min) electrochemical biosensor with a limit of detection of 180 nmol (11 ppm), thus opening a route for the rational design of a new generation of hybrid DNAzyme-based biosensors.

Description

Acknowledgements: This work was supported by EPSRC-Hitachi ICase PhD studentship Nr G105536 awarded to W. E. S. P. would like to thank EPSRC Sensor CDT and Cambridge International Trust and TRinity College-Henry Barlow Scholarship.

Keywords

DNA, Catalytic, Copper, Gold, Metal Nanoparticles, DNA, Biosensing Techniques, Ions

Journal Title

Nanoscale

Conference Name

Journal ISSN

2040-3364
2040-3372

Volume Title

Publisher

Royal Society of Chemistry (RSC)
Sponsorship
Engineering and Physical Sciences Research Council (2302918)