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Molecular ​​time-sharing ​​through​​ dynamic ​​pulsing ​​in ​​single ​​cells

Published version
Peer-reviewed

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Authors

Locke, JCW 

Abstract

n cells, specific regulators often compete for limited amounts of a core enzymatic resource. It is typically assumed that competition leads to partitioning of core enzyme molecules among regulators at constant levels. Alternatively, however, different regulatory species could time share, or take turns utilizing, the core resource. Using quantitative time-lapse microscopy, we analyzed sigma factor activity dynamics, and their competition for RNA polymerase, in individual Bacillus subtilis cells under energy stress. Multiple alternative sigma factors were activated in ∼1-hr pulses in stochastic and repetitive fashion. Pairwise analysis revealed that two sigma factors rarely pulse simultaneously and that some pairs are anti-correlated, indicating that RNAP utilization alternates among different sigma factors. Mathematical modeling revealed how stochastic time-sharing dynamics can emerge from pulse-generating sigma factor regulatory circuits actively competing for RNAP. Time sharing provides a mechanism for cells to dynamically control the distribution of cell states within a population. Since core molecular components are limiting in many other systems, time sharing may represent a general mode of regulation.

Description

Keywords

microfluidics, partitioning, pulsing, shared resources, sharing, time sharing, Bacillus subtilis, Bacterial Proteins, DNA-Directed RNA Polymerases, Gene Expression Regulation, Bacterial, Sigma Factor

Journal Title

Cell Systems

Conference Name

Journal ISSN

2405-4712
2405-4720

Volume Title

6

Publisher

Elsevier
Sponsorship
European Research Council (338060)
The Royal Society (uf130313)
European Commission (322140)
Gatsby Charitable Foundation (unknown)