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MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

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cam.depositDate2021-12-27
cam.issuedOnline2022-02-01
cam.oa.sapoa_rrs_na
cam.orpheus.counter2
cam.orpheus.successWed Mar 23 10:26:21 GMT 2022 - Embargo updated
datacite.ispreviousversionof.handlehttps://www.repository.cam.ac.uk/items/5d29cbfe-a958-41a6-9438-321aa48091db
dc.contributor.authorFátima, Jorge
dc.contributor.authorBrealey, Jaelle
dc.contributor.authorBrindley, Paul
dc.contributor.authorBuysse, Marie
dc.contributor.authorCantacessi, Cinzia
dc.contributor.authorDuron, Olivier
dc.contributor.authorFichorova, Raina
dc.contributor.authorFitzpatrick, Connor
dc.contributor.authorHahn, Megan
dc.contributor.authorHunter, Christopher
dc.contributor.authorHervé, Vincent
dc.contributor.authorLaura, Knoll
dc.contributor.authorKohl, Kevin D
dc.contributor.authorLalle, Marco
dc.contributor.authorLukeš, Julius
dc.contributor.authorMartínez Martínez, Joaquín
dc.contributor.authorPerkins, Susan L
dc.contributor.authorPoulin, Robert
dc.contributor.authorRosario, Karyna
dc.contributor.authorSchneider, Adam C
dc.contributor.authorSchriml, Lynn M
dc.contributor.authorThompson, Luke R
dc.contributor.authorWalls, Ramona L
dc.contributor.authorDheilly, Nolwenn M
dc.contributor.orcidCantacessi, Cinzia [0000-0001-6863-2950]
dc.date.accessioned2022-01-05T00:31:07Z
dc.date.available2022-01-05T00:31:07Z
dc.date.issued2022-12
dc.date.updated2021-12-27T17:39:36Z
dc.description.abstractThe symbiont-associated (SA) environmental package is a new extension to the minimum information about any (x) sequence (MIxS) standards, established by the Parasite Microbiome Project (PMP) consortium, in collaboration with the Genomics Standard Consortium. The SA was built upon the host-associated MIxS standard, but reflects the nestedness of symbiont associated microbiota within and across host-symbiont-microbe interactions. This package is designed to facilitate the collection and reporting of a broad range of metadata information that apply to symbionts such as life history traits, association with one or multiple host organisms, or the nature of host-symbiont interactions along the mutualism-parasitism continuum. To better reflect the inherent nestedness of all biological systems, we present a novel feature that allows users to co-localize samples, to nest a package within another package, and to identify replicates. Adoption of the MIxS-SA and of the new terms will facilitate reports of complex sampling design from a myriad of environments
dc.identifier.doi10.17863/CAM.79397
dc.identifier.issn2730-6151
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/331948
dc.language.isoeng
dc.publisherSpringer Nature
dc.publisher.departmentDepartment of Veterinary Medicine
dc.rightsAll Rights Reserved
dc.rights.urihttp://www.rioxx.net/licenses/all-rights-reserved
dc.subject3107 Microbiology
dc.subject31 Biological Sciences
dc.subjectHuman Genome
dc.subjectGenetics
dc.subjectInfection
dc.titleMIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms
dc.typeArticle
dcterms.dateAccepted2021-12-26
prism.publicationNameISME Communications
pubs.licence-display-nameApollo Repository Deposit Licence Agreement
pubs.licence-identifierapollo-deposit-licence-2-1
rioxxterms.typeJournal Article/Review
rioxxterms.versionAM
rioxxterms.versionofrecord10.1038/s43705-022-00092-w

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