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dc.contributor.authorCooper, Sen
dc.contributor.authorBarr, ARen
dc.contributor.authorGlen, Roberten
dc.contributor.authorBakal, Cen
dc.date.accessioned2017-08-30T14:07:54Z
dc.date.available2017-08-30T14:07:54Z
dc.date.issued2017-06-20en
dc.identifier.issn1367-4803
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/266956
dc.description.abstractSummary: Live imaging studies give unparalleled insight into dynamic single cell behaviours and fate decisions. However, the challenge of reliably tracking single cells over long periods of time limits both the throughput and ease with which such studies can be performed. Here, we present NucliTrack, a cross platform solution for automatically segmenting, tracking and extracting features from fluorescently-labelled nuclei. NucliTrack performs similarly to other state-of-the-art cell tracking algorithms, but NucliTrack's interactive, graphical interface makes it significantly more user friendly. Availability: NucliTrack is available as a free, cross platform application, and open source Python package. Installation details and documentation are at: http://nuclitrack.readthedocs.io/en/latest / A video guide can be viewed online: https://www.youtube.com/watch?v=J6e0D9F-qSU Source code is available through Github: https://github.com/samocooper/nuclitrack . A Matlab toolbox is also available at: https://uk.mathworks.com/matlabcentral/fileexchange/61479-samocooper-nuclitrack-matlab. Contact: sam@socooper.com. Supplementary information: Supplementary data are available at Bioinformatics online.
dc.languageengen
dc.language.isoenen
dc.publisherOxford University Press
dc.rightsAttribution 4.0 International (CC BY)
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.titleNucliTrack: An integrated nuclei tracking applicationen
dc.typeArticle
prism.publicationDate2017en
prism.publicationNameBioinformaticsen
dc.identifier.doi10.17863/CAM.12081
dcterms.dateAccepted2017-06-16en
rioxxterms.versionofrecord10.1093/bioinformatics/btx404en
rioxxterms.versionVoRen
rioxxterms.licenseref.urihttp://www.rioxx.net/licenses/all-rights-reserveden
rioxxterms.licenseref.startdate2017-06-20en
dc.contributor.orcidGlen, Robert [0000-0003-1759-2914]
dc.identifier.eissn1367-4811
rioxxterms.typeJournal Article/Reviewen
cam.issuedOnline2017-06-20en
cam.orpheus.successThu Jan 30 10:20:12 GMT 2020 - The item has an open VoR version.*
rioxxterms.freetoread.startdate2100-01-01


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Attribution 4.0 International (CC BY)
Except where otherwise noted, this item's licence is described as Attribution 4.0 International (CC BY)