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dc.contributor.authorBeaton, Ainsley
dc.contributor.authorLood, Cédric
dc.contributor.authorCunningham-Oakes, Edward
dc.contributor.authorMacFadyen, Alison
dc.contributor.authorMullins, Alex J
dc.contributor.authorBestawy, Walid El
dc.contributor.authorBotelho, João
dc.contributor.authorChevalier, Sylvie
dc.contributor.authorColeman, Shannon
dc.contributor.authorDalzell, Chloe
dc.contributor.authorDolan, Stephen K
dc.contributor.authorFaccenda, Alberto
dc.contributor.authorGhequire, Maarten GK
dc.contributor.authorHiggins, Steven
dc.contributor.authorKutschera, Alexander
dc.contributor.authorMurray, Jordan
dc.contributor.authorRedway, Martha
dc.contributor.authorSalih, Talal
dc.contributor.authorda Silva, Ana C
dc.contributor.authorSmith, Brian A
dc.contributor.authorSmits, Nathan
dc.contributor.authorThomson, Ryan
dc.contributor.authorWoodcock, Stuart
dc.contributor.authorWelch, Martin
dc.contributor.authorCornelis, Pierre
dc.contributor.authorLavigne, Rob
dc.contributor.authorvan Noort, Vera
dc.contributor.authorTucker, Nicholas P
dc.date.accessioned2018-09-20T12:04:08Z
dc.date.available2018-09-20T12:04:08Z
dc.date.issued2018-05-01
dc.identifier.issn0378-1097
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/280462
dc.description.abstractPseudomonas baetica strain a390T is the type strain of this recently described species and here we present its high-contiguity draft genome. To celebrate the 16th International Conference on Pseudomonas, the genome of P. baetica strain a390T was sequenced using a unique combination of Ion Torrent semiconductor and Oxford Nanopore methods as part of a collaborative community-led project. The use of high-quality Ion Torrent sequences with long Nanopore reads gave rapid, high-contiguity and -quality, 16-contig genome sequence. Whole genome phylogenetic analysis places P. baetica within the P. koreensis clade of the P. fluorescens group. Comparison of the main genomic features of P. baetica with a variety of other Pseudomonas spp. suggests that it is a highly adaptable organism, typical of the genus. This strain was originally isolated from the liver of a diseased wedge sole fish, and genotypic and phenotypic analyses show that it is tolerant to osmotic stress and to oxytetracycline.
dc.format.mediumPrint
dc.languageeng
dc.publisherOxford University Press (OUP)
dc.rightsAttribution 4.0 International
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.subjectAnimals
dc.subjectPseudomonas
dc.subjectPseudomonas Infections
dc.subjectFish Diseases
dc.subjectSequence Analysis, DNA
dc.subjectGenomics
dc.subjectPhylogeny
dc.subjectPhenotype
dc.subjectGenome, Bacterial
dc.subjectSemiconductors
dc.subjectNanopores
dc.titleCommunity-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies.
dc.typeArticle
prism.issueIdentifier9
prism.publicationDate2018
prism.publicationNameFEMS Microbiol Lett
prism.volume365
dc.identifier.doi10.17863/CAM.27833
dcterms.dateAccepted2018-03-21
rioxxterms.versionofrecord10.1093/femsle/fny069
rioxxterms.licenseref.urihttp://www.rioxx.net/licenses/all-rights-reserved
rioxxterms.licenseref.startdate2018-05
dc.contributor.orcidDolan, Stephen [0000-0002-7391-2137]
dc.contributor.orcidWelch, Martin [0000-0003-3646-1733]
dc.identifier.eissn1574-6968
rioxxterms.typeJournal Article/Review
pubs.funder-project-idRosetrees Trust (A1318)
pubs.funder-project-idEvelyn Trust (17/51)
cam.issuedOnline2018-03-22


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Attribution 4.0 International
Except where otherwise noted, this item's licence is described as Attribution 4.0 International