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RNA-seq of newly diagnosed patients in the PADIMAC study leads to a bortezomib/lenalidomide decision signature.

Accepted version
Peer-reviewed

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Authors

Sive, Jonathan 
Ambrose, John 
Roddie, Claire 
Counsell, Nicholas 

Abstract

Improving outcomes in multiple myeloma will involve not only development of new therapies but also better use of existing treatments. We performed RNA sequencing on samples from newly diagnosed patients enrolled in the phase 2 PADIMAC (Bortezomib, Adriamycin, and Dexamethasone Therapy for Previously Untreated Patients with Multiple Myeloma: Impact of Minimal Residual Disease in Patients with Deferred ASCT) study. Using synthetic annealing and the large margin nearest neighbor algorithm, we developed and trained a 7-gene signature to predict treatment outcome. We tested the signature in independent cohorts treated with bortezomib- and lenalidomide-based therapies. The signature was capable of distinguishing which patients would respond better to which regimen. In the CoMMpass data set, patients who were treated correctly according to the signature had a better progression-free survival (median, 20.1 months vs not reached; hazard ratio [HR], 0.40; confidence interval [CI], 0.23-0.72; P = .0012) and overall survival (median, 30.7 months vs not reached; HR, 0.41; CI, 0.21-0.80; P = .0049) than those who were not. Indeed, the outcome for these correctly treated patients was noninferior to that for those treated with combined bortezomib, lenalidomide, and dexamethasone, arguably the standard of care in the United States but not widely available elsewhere. The small size of the signature will facilitate clinical translation, thus enabling more targeted drug regimens to be delivered in myeloma.

Description

Keywords

Antineoplastic Agents, Antineoplastic Combined Chemotherapy Protocols, Bortezomib, Dexamethasone, Doxorubicin, Humans, Kaplan-Meier Estimate, Lenalidomide, Machine Learning, Multiple Myeloma, Mutation, Proportional Hazards Models, Sequence Analysis, RNA, Transcriptome, Treatment Outcome, United States

Journal Title

Blood

Conference Name

Journal ISSN

0006-4971
1528-0020

Volume Title

132

Publisher

American Society of Hematology
Sponsorship
Wellcome Trust (098638/Z/12/A)
Wellcome Trust (098638/Z/12/Z)
Wellcome Trust, Bloodwise, Cancer Research UK,